On 08/19/2013 02:10 AM, Robert Hanson wrote: > For example, your database shows structures. What's the best default > orientation to show such that the longest side of the box is along X and > the shortest depth is toward the user? > > rotate BEST > I thought that this might be an intended usage. But I didn't understand it from the description.
Have you compared the results with the much faster (and atom number independent) approximation using the boundbox plane sizes, like we are using it in the Jena3D viewer (jena3d.jenage.de)? Although it doesn't work perfectly for all PDB entries it works overall quite well. And if you have to precalculate about 300.000 images for all PDB structures it makes quite a difference if the selection of the orientation takes milliseconds or in the range of seconds. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Get 100% visibility into Java/.NET code with AppDynamics Lite! It's a free troubleshooting tool designed for production. Get down to code-level detail for bottlenecks, with <2% overhead. Download for free and get started troubleshooting in minutes. http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
