For the second one, use:
load append xxxx.gamess filter "REVERSEMODELS"
has worked in the past for me, at least for Spartan files. After that, you
might have to delete one or more models.
You also may need to do some alignment. For that see
http://chemapps.stolaf.edu/jmol/docs/index.htm?search=frame%20align&ver=13.3.4_dev_2013.08.19
On Mon, Aug 19, 2013 at 3:22 PM, Whitwell, George <[email protected]>wrote:
> Hi,
>
> I have GAMESS output from both sides of the reaction coordinates from
> a Cl-CH3-Br anion intermediate as an example of an SN2 reaction. I can
> load both output files in Jmol as different models and animate them
> consecutively; however, since they both run downhill, it isn't really the
> sequence of the desired SN2 trajectory.
>
>
>
> How can I reverse the order of the frames of one model and is there a
> preferred way to save the collection of frames from both models in one
> file? Also, is Jmol reading the energy of each structure and can I access
> that as a variable?
>
>
>
> Thanks for any help,
>
> George
>
>
>
> Dr. George E. Whitwell
> Associate Professor - Chemistry
> North Carolina Wesleyan College
>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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