Not exactly the subject, but when downloading a pdb file from RCSB website, the
server checks if the browser accepts compressions and compress the pdb file on
the file. You don't have to explicitly request a pdb.gz file to get the
benefits from data compression.
Paul
Le 8 sept. 2013 à 08:25, Geoffrey Rowland a écrit :
> I *think* I understand what is going on here.
>
> The problem appears due to inconsistencies in the way the pdb files are
> gzipped up
>
> In my jsmol /data folder:
>
> 1crn.pdb.gz is not actually gzipped at all, just a plain text file identical
> to 1crn.pdb. However, if 1crn.pdb is gzipped to make a bona fide 1crn.pdb.gz,
> it still works!
>
> 1m19.pdb.gz contains 1M19.pdb. Note the uppercase M. If a consistently
> lowercase gzip bundle is made, it works!
>
> 3hz7.pdb.gz contains 3hz7x.pdb. Note the extra x!. If the x is removed and
> the gzipped archive reconstructed, everything works!
>
> My local webserver, and most of my testing, has been on Fedora Linux. So, may
> have displayed case-sensitivity issues not occurring on Windows.
>
> Hope that helps someone.
>
>
>
> >On 8 September 2013 12:26, Geoffrey Rowland <[email protected]> wrote:
> Err... Actually though .pse files now work with Chrome, I am still seeing an
> issue with some .pdb.gz files (e.g. data/1m19.pdb.gz, data/3hz7.pdb.gz)
> though data/1crn.pdb.gz still works!
>
> Forgot the RCSB links were now using .pdb rather than .pdb.gz and can't
> easily check against the Stolaf server as jsmol.htm does not have any .pdb.gz
> links.
>
> Anyway, not a 'show stopper' as can use the .pdb files instead.
>
> Cheers
>
>
>
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