Hi Amjad 

>     (2) Is it possible to provide a more user-friendly javascript syntax for 
>     JSmol that directly builds upon the Jmol syntax (which most of us are 
>     familiar with and thus would make it easier to switch between the two 
>     easily)?

Have you looked at the Jmol2.js library? It allows you to keep the classical 
syntax and internally converts it to the new one.
http://wiki.jmol.org/index.php/JSmol#Conversion_using_the_Jmol2.js_.27ada
pter.27_library

I personally think it is better to move into applying the new syntax, though.

There is also a bigger issue if you make a page that holds more than one 
Jmol Object. Then you must be more careful with the syntax and there are 
some differences in the way they are addressed now, but the object-oriented 
method of JSmol should be more easily managed in this cases.

Finally don't forget that the new (JSmol) Jmol-JSO constructs also allow to 
use the Jmol Java applet.


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