Bob,
The atomno reassignment fixes part of my problem. This is definitely new
behavior that comes up in load append (same frame) and multiple model load from
JSME. In the latter, you can see atomno sequence jumping back and forth between
models. The fix for me is simply to renumber the whole collection on each load:
for (var i = 1; i < {*}.length +1; i++){ {*}[i].atomno = i }
The only problem I can see in this for other users who may run into this is the
atom labels (C1, C2, etc) need to be rewritten if they are important in hover
usage or callback in an application.
I'm still left with Safari (not Chrome or FF) randomly freezing on my
conformation rotation script. I'll work on this some more. It could be my
problem. If I initiate the rotation script immediately on loading a model, all
seems OK. If I perform other scripting first, the freeze comes up randomly. The
worst kind of bug.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 1, 2013, at 7:55 AM, Robert Hanson <hans...@stolaf.edu> wrote:
> Sounds right to me, Otis. They should have the same atom numbers because they
> are the same model.
>
> Are you saying this behavior is different with previous versions? I don't
> think so. Let me know if that's the case.
>
> If you want to assign different atom numbers, you can do that:
>
> var lastOld = {*}/2
> for (var i = {*}; i > lastOld;i--) { {*}[i].atomno += lastOld }
>
> Bob
>
>
>
> On Thu, Oct 31, 2013 at 11:26 PM, Otis Rothenberger <osrot...@chemagic.com>
> wrote:
> Bob,
>
> I recently installed 13.3.8_dev_2013.10.29. In the course of trying to find a
> nasty conformation rotation bug in my code, I found a problem with loadappend.
>
> Go to http://chemagic.com/JSmolVMK.htm. Duplicate (link) the default model.
> These two models have identical atomno's - e.g. select atomno=1;color pink
>
> The "duplicate" link on this page appends with set loadappend = false.
>
> The extracted molfile looks OK, but the scripting atomno's are both 1 to 15.
>
> Otis
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
>
>
>
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> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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