Hi All,

I'm finding that setting cartoon loop transparency works for sheets and
strands but not for loops.

Is this happening for anyone else.

I'm using the HTML5 viewing option and mostly viewing on chrome on Linux

Kind regards,

Glen




Here is a dump of the console in case it is of use:


Jmol._Canvas2D (JSmol) "view_div_2gvz_3"[x]
call loadScript \atlas\js\libs\jsmol\core\package.js
call loadScript \atlas\js\libs\jsmol\core\core.z.js -- required by ClazzNode
call loadScript \atlas\js\libs\jsmol\J\awtjs2d\WebOutputChannel.js
JmolCore.js: synchronous binary file transfer is not available
Jmol JavaScript applet view_div_2gvz_3_object__862444059923291__
initializing
getValue debug = null
getValue logLevel = null
getValue allowjavascript = null
AppletRegistry.checkIn(view_div_2gvz_3_object__862444059923291__)
call loadScript \atlas\js\libs\jsmol\core\corestate.z.js
viewerOptions:
{
"name":"view_div_2gvz_3_object","applet":true,"documentBase":"http://localhost","platform":"J.awtjs2d.Platform","fullName":"view_div_2gvz_3_object__862444059923291__","progressbar":true,"display":"view_div_2gvz_3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol.MyStatusListener
object]","codeBase":"/js/libs/jsmol/j2s/","syncId":"862444059923291","progresscolor":"#66666","bgcolor":"#ffffff"
}
(C) 2012 Jmol Development
Jmol Version: 13.2.7 $Date: 2013-10-01 11:35:15 -0500 (Tue, 01 Oct 2013) $
java.vendor: j2s
java.version: 0.0
os.name: j2s
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:view_div_2gvz_3_object (signed)
starting HoverWatcher_1
getValue emulate = null
defaults = "Jmol"
getValue boxbgcolor = null
getValue bgcolor = #ffffff
backgroundColor = "#ffffff"
getValue ANIMFRAMECallback = null
getValue APPLETREADYCallback = Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
getValue ATOMMOVEDCallback = null
getValue CLICKCallback = null
getValue ECHOCallback = null
getValue ERRORCallback = null
getValue EVALCallback = null
getValue HOVERCallback = null
getValue LOADSTRUCTCallback = null
getValue MEASURECallback = null
getValue MESSAGECallback = null
getValue MINIMIZATIONCallback = null
getValue PICKCallback = null
getValue RESIZECallback = null
getValue SCRIPTCallback = null
getValue SYNCCallback = null
getValue STRUCTUREMODIFIEDCallback = null
getValue doTranslate = null
language=en_GB
getValue popupMenu = null
getValue script = null
Jmol applet view_div_2gvz_3_object__862444059923291__ ready
call loadScript \atlas\js\libs\jsmol\core\corescript.z.js
call loadScript \atlas\js\libs\jsmol\J\script\FileLoadThread.js
starting QueueThread0_2
script 1 started
antialiasDisplay = true
antialiasTranslucent = true
debugScript = false
showScript = 0
chainCaseSensitive = true

-- 
Protein Data Bank in Europe (PDBe: http://pdbe.org)
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton, Cambridge
CB10 1SD

Tel: 01223 492529
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"To err is human, but to really foul things up you need a computer."  --Paul 
Ehrlich

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