Jaim, could you please try
http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.24.zip
with the PyMOL reading test at
http://ispcsrv.weizmann.ac.il/a2jmolb/browseand report back how it
went? I'm not having any problem with the files that
are listed as "failed" on this end, so whatever that is, I'm thinking it
might be fixed.
Bob
On Sun, Nov 24, 2013 at 2:58 AM, Jaime Prilusky <
jaime.prilu...@weizmann.ac.il> wrote:
> Thank you for this release. Runs Ok on Mac 10.9 FFox 25.0.1
>
> Unable to convince Safari 7.0 to run a local applet.
>
> Also tried with a Proteopedia exported page and (again FFox on Mac) it
> works great!!
>
> Jaim
>
>
> On Nov 24, 2013, at 8:47 AM, Robert Hanson <hans...@stolaf.edu> wrote:
>
> Here's the file set that should run locally, possibly with no questions
> asked except a first one.
>
> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.23b.zip
>
> The test is to open test2.htm and click the "signed applet" link next to
> the applet.
>
> And, of course, to try your own pages.
>
> Bob
>
>
>
>
> On Sat, Nov 23, 2013 at 10:44 PM, Robert Hanson <hans...@stolaf.edu>
> wrote:
>
>> Very pleased to report that we should have no problem with file://
>> based loading of Jmol and JSpecView java applets. In fact, now you don't
>> need a browser to open them, either. The solution was to provide "Java
>> Network Launch Protocols" in the directory containing the JAR files and to
>> reference that with a jnlp-href attribute in the applet's object tag.
>> Simple as that! Here is the Oracle developer forum answer that gave me the
>> clue: https://forums.oracle.com/message/11256775#11256775
>>
>> I must say, my hat is off to these guys. Java applets still rock. Hope to
>> have files people can test tomorrow.
>>
>>
>> Bob
>>
>>
>>
>>
>>
>> On Sat, Nov 23, 2013 at 7:45 AM, Robert Hanson <hans...@stolaf.edu>
>> wrote:
>>
>>> Yes, OK, so Henry found a catch.
>>>
>>> I'm afraid this means no local access to Java applets. At least not in
>>> this iteration. In order to use Java applets on a local machine you will
>>> have to install a localhost web server.
>>>
>>> Bummer for conferences.
>>>
>>> I will complain.
>>>
>>>
>>>
>>>
>>> On Sat, Nov 23, 2013 at 3:34 AM, Rzepa, Henry S <h.rz...@imperial.ac.uk
>>> > wrote:
>>>
>>>>
>>>> On 23 Nov 2013, at 00:01, Robert Hanson <hans...@stolaf.edu> wrote:
>>>>
>>>> > Oops! That's the earlier link -- here's the new one:
>>>> >
>>>> > http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?SIGNED
>>>> >
>>>> >
>>>>
>>>> I downloaded JmolAppletSigned.jar from
>>>> http://chemapps.stolaf.edu/jmol/jsmol//java/
>>>>
>>>> and used it locally. It displayed a dialog “Do you want to run this
>>>> application”, indicated the publisher was Integrated Graphics, and the
>>>> location was file://
>>>>
>>>> It then gave the yellow screen indicating “This application will be
>>>> blocked in a future …”.
>>>>
>>>> I ticked the box “Do not show this again for apps from the publisher
>>>> and location above” and proceeded but this then produced no Jmol output and
>>>> an error
>>>>
>>>> [Error] Failed to load resource: The requested URL was not found on
>>>> this server. (JmolApplet.class, line 0)
>>>>
>>>> >From which I take it that the appropriate (Apache?) server response
>>>> was not received which leads me to believe that one would have to run a
>>>> local http or https service to get this to work? Or is it that it cannot
>>>> find the (relative? Absolute?) path to the jar file?
>>>>
>>>> But the odd thing is, as I noted before, if I used standard
>>>> production Jmol (without a developer certificate), Jmol does load (although
>>>> again with yellow box saying it might not work for future upgrades of
>>>> Java) and no error messages result.
>>>>
>>>> so I guess installing the developer certificate has changed the
>>>> underlying behaviour. The metaphor must be to trust only remote sites, and
>>>> not a local one?
>>>>
>>>>
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>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
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>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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