On 5 Jan 2014, at 14:36, Otis Rothenberger <[email protected]> wrote:

> These questions may have already been addressed. If so, just point me in the 
> right direction.
> 
> Can someone clarify the meaning of the following terms in the context of the 
> new Jmol/JSmol?
> 
> Jmol
> JSmol
> Applet
> Jmol script
> JSmol script
> 

There is also the historic Rasmol  script (RAS = Roger  A Sayle), which I 
believe is synonymous with  Jmol and  JSmol script. Roger of course contributed 
 Rasmol, of which a fair bit of code was probably used in the original versions 
of Jmol.

In case any on this list do not know the history,  prior to  ~1991, the idea of 
real time rendered rotation of large biomolecular structures on a mere 
“personal computer” was considered a fantasy;  you needed a “real graphics 
workstation” to do this, if not an  Evans and Sutherland, then certainly a 
Silicon Graphics. It was Rasmol that changed all of that.It was also Rasmol 
that was first deployed on a  Web page (you may know that instance as Chime, 
but that was really Rasmol).

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