It's not that the alert is coming first; it's that there is no REFRESH
before the alert. If you had that command prior to the  javascript command,
then the structure will appear before the alert.

I would argue that this is proper behavior. There is no particular reason
to demand an automatic refresh prior to a javascript command, and the
behavior is the same for both Java and HTML5 modes.

Bob




On Mon, Jan 13, 2014 at 5:12 AM, Jaime Prilusky <
jaime.prilu...@weizmann.ac.il> wrote:

> We used to have a call to javascript as part of the script text, but that
> is not longer working:
>
> Jmol.script(jmol0,'load data/123.pdb; javascript alert(“Back”);’);
>
> On the following example, the alert() happens before the script gets
> executed. The threading mechanism plays here against us.
>
> Jmol.script(jmol0,'load data/123.pdb; select all; color blue;');
> alert(“Back”);
>
> Suggestions? The set (callback) mechanism doesn’t seem to be the right
> choice.
>
> Jaim
>
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-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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