If load a file into Jmol, you have to send it a sync signal via
Jmol.updateView(jmolApplet0);
It won't do that automatically.
Bob
On Fri, Feb 7, 2014 at 11:37 AM, Otis Rothenberger <[email protected]>wrote:
> Bob,
>
> I was just testing 2d and 3d to make sure that was not the issue.
>
> OK, I see that for Jmol.search(jmol, ":smiles:CCOCC") also.
>
> Does that mean that search is essential for the sync - i.e. you cannot
> load a local server molfile into Jmol/JSpecView is a sync state?
>
> The back door is not essential for me going to PubChem. For Resolver calls
> involving NIST, I need to do this. I'm not pulling IR and MS spectra from
> structured data files. I'm poking around NIST webpages, and the whole
> process is pretty nutty. Fortunately, NIST web pages are fairly structured.
>
> Otis
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
> On Feb 7, 2014, at 10:59 AM, Robert Hanson <[email protected]> wrote:
>
> Otis, I think the problem is that you expect to be able to use all the
> back doors you are used to using. In this case you are constructing your
> own simulation url and hoping that is all you need. If you do that, then
> you would have to follow exactly what the JSME applet does when it delivers
> a 2D file to Jmol. But you aren't doing that. You are just loading the
> file into Jmol.
>
> So one problem is that what ends up in Jmol is a 2D file. Surely you do
> not want that, right?
>
> Notice that when I go to your site and enter this in the developer console:
>
>
> *Jmol.search(jmol, ":caffeine") *
> I get the desired result. Or, for example:
>
> Jmol.search(jmol, ":smiles:CCOCC")
>
> What is the role of the hidden JSME app?
>
> Bob
>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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Take advantage of what the Cloud has to offer - Avoid Common Pitfalls.
Read the Whitepaper.
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