Must be a documentation error -- you need quotes around the file name in an
isosurface command. The load, script, and write commands are special in
that regard, but the isosurface command is so complicated it needs quotes.
On Wed, Mar 12, 2014 at 1:15 PM, Dale Tronrud <de...@daletronrud.com> wrote:
> Hi,
>
> I'm a newbie to the jmol world and have been very impressed by
> what I've seen so far. I'm starting with a little web app to display
> a bit of a protein along with its electron density map.
>
> I'm using version 14.0.11. The documentation web page at
>
> http://chemapps.stolaf.edu/jmol/docs/?ver=14.0#isosurface
>
> tells me that I should be able to load a map from the EDS with
>
> isosurface ID DenMap within 7.0 {26:E} color blue =8tln mesh nofill
>
> but this command doesn't give me a map. I think it is causing the
> entire script to bomb but I haven't figured out if or where an
> error message is sent.
>
> If I download the map myself from the EDS and load it with
>
> isosurface ID DenMap within 7.0 {26:E} color blue data/8tln.ccp4.gz mesh
> nofill
>
> I get a density map just fine.
>
> How is isosurface =XXXX supposed to work?
>
> Thanks,
> Dale Tronrud
>
>
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--
Robert M. Hanson
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St. Olaf College
Northfield, MN
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it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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