"I released this version with Jmol 14.0.13 because of some problem
with isosurfaces in 14.0.14. My prior code (for "empty baskets" to
show where residues are missing from the model due, usually, to
crystallographic disorder) works in 14.0.13 but not in 14.0.14. The
simple isosurface command works fine in 14.0.14 so I will need to
spend time to determine what sequence of script commands in
FirstGlance causes it to fail."
Yes, please do. I was about to release 14.1.14 (again!) but will wait until
this evening to do that if you can get back to me with this.
What are these "empty baskets"? Please point me to where they are utilized.
Bob
On Sun, Apr 27, 2014 at 11:35 PM, Eric Martz <[email protected]>wrote:
> I have today released FirstGlance in Jmol version 2.00. As always,
>
> http://FirstGlance.Jmol.Org
>
> This version needs no Java. By default, it uses JSmol (no Java), so
> it can run on computers where Java is not installed, or is
> unavailable (such as iPads).
>
> It can also run with Java, which greatly improves speed, performance,
> and smoothness of rotation of the molecule.
>
> There is a new Preferences tab, in which you can set it to default to
> using Java. Installing and enabling Java in various web browsers has
> become more and more challenging, so detailed instructions are linked
> to the Preferences tab.
>
> This version has no new capabilities for molecular display. It mainly
> makes using JSmol without Java much more user friendly (I hope!).
>
> I released this version with Jmol 14.0.13 because of some problem
> with isosurfaces in 14.0.14. My prior code (for "empty baskets" to
> show where residues are missing from the model due, usually, to
> crystallographic disorder) works in 14.0.13 but not in 14.0.14. The
> simple isosurface command works fine in 14.0.14 so I will need to
> spend time to determine what sequence of script commands in
> FirstGlance causes it to fail.
>
> Feedback welcome. There is always much more to do but feedback can
> alert me to issues I've overlooked, and help me set priorities.
>
> Eric
>
>
> /* - - - - - - - - - - - - - - - - - - - - - - - - - - -
> Eric Martz, Professor Emeritus, Dept Microbiology
> U Mass, Amherst -- http://Martz.MolviZ.Org
>
> Top Five 3D MolVis Technologies http://Top5.MolviZ.Org
> FirstGlance: 3D Views in Nature - http://firstglance.jmol.org
> 3D Protein Wiki with Scene-Authoring Tools http://Proteopedia.Org
> Biochem 3D Education Resources http://MolviZ.org
> ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
> Atlas of Macromolecules: http://atlas.molviz.org
> Interactive Molecules in Public Spaces http://MolecularPlayground.Org
> Workshops: http://workshops.molviz.org
> - - - - - - - - - - - - - - - - - - - - - - - - - - - */
>
>
>
> ------------------------------------------------------------------------------
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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