Great -- that is now available as
http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.16_2014.05.15.zip
On Thu, May 15, 2014 at 9:07 PM, Frieda Reichsman <[email protected]> wrote:
> The depth command for 3D echoes is nice! It works well, Bob. For the
> 7-transmembrane helix protein I’m working with, a depth of 1010 puts the
> echo outside of the labeled helix barrel, but not out in front of
> neighboring helices. So the depth feature solves the “burying” problem.
>
> By applying a center justification to it as well, it is now riding along
> in the center of the barrel even when the structure spins.
>
> So in case this sort of label is useful to others... I chose a long enough
> range of helix residues that the average position would be central to the
> barrel, used the depth feature to put it just in front of the barrel,
> center justified it as follows, and set the font size, weight, and color,
> as follows:
>
> set echo myecho {200-225}; echo G;
> set echo myecho depth 1010;
> set echo myecho center;
> font echo 22 sans bold; color echo white
>
> Frieda
>
>
>
> On May 12, 2014, at 1:36 AM, Bob Hanson <[email protected]> wrote:
>
> Frieda. See http://chemapps.stolaf.edu/jmol/zip/Jmol.jar
>
> Sent from my stupid iPhone
>
> On May 11, 2014, at 10:11 AM, Bob Hanson <[email protected]> wrote:
>
> Needs a new feature
>
> Set echo myecho depth x.x
>
> For 3d echos. Done. Values >= 1000 are relative to original point. So you
> might want
>
> Set echo myecho @1
>
> Set echo myecho depth 1020
>
> 20% of depth in front of atom 1
>
> Will get uploaded tomorrow.
>
> Sent from my stupid iPhone
>
> On May 10, 2014, at 6:22 PM, Frieda Reichsman <[email protected]> wrote:
>
> Hi All,
>
> I’m trying to get a label to sit still on a rocket barrel helix while the
> structure is spinning. Since the rocket barrel is drawn inside the helix
> diameter, there are no atoms serendipitously positioned for this purpose. I
> tried positioning it as the average of two residues that are opposite each
> other on the helix:
> set echo myecho {221-223}; echo test;
> but that gets buried inside the rocket barrel. I can see the “st” poking
> out.
>
> Is there a way to get it to appear in front of the barrel, analogous to
> “set labelFront on”?
>
> Frieda
>
>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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