I don't remember when this was implemented, but for large models now
unconnected nonprotein atoms are shown by default as stars, not balls.
There is a bug that the balls are still shown.
On Sun, Jun 1, 2014 at 12:31 PM, Eric Martz <[email protected]>
wrote:
> When I "load =2q08" into the application 14.1.16, then wireframe off,
> spacefill off, I see lots of red stars, one for each water oxygen.
> They may be hidden by the spacefill until it is turned off.
>
> My code in FirstGlance assumes no stars need to be turned off. I can
> change that of course but if it is a bug, better to fix it.
>
> Glad to know about 14.0.16 forthcoming. That will also deal with the
> bug (now fixed) where hydrogens in HOH were not "water".
>
> Eric
>
> At 5/31/14, Robert Hanson wrote:
> >Well, 14.0.13 will become 14.0.16 this week, so let's not worry about
> that.
> >
> >For 14.1.16, I am not seeing what you are seeing. I am seeing red
> >balls for water, as always.
> >
> >
> >
> >
> >
> >On Sat, May 31, 2014 at 5:20 PM, Eric Martz
> ><<mailto:[email protected]>[email protected]> wrote:
> >Dear Bob,
> >
> >In Jmol 14.0.13, the initial default displays for 2q08 (2Q zero 8)
> >and 1s5l (1S5L) include a small star on every atom. This appears to
> >me to be a bug.
> >
> >14.1.16 (and 13.0.16 and 12.0.31) do not star every atom in these PDB
> >instances, but put a small star on every water oxygen in 2q08.
> >
> >Eric
> >
> >
>
> >------------------------------------------------------------------------------
> >Time is money. Stop wasting it! Get your web API in 5 minutes.
> ><http://www.restlet.com/download>www.restlet.com/download
> >http://p.sf.net/sfu/restlet
> >_______________________________________________
> >Jmol-users mailing list
> ><mailto:[email protected]>[email protected]
> >https://lists.sourceforge.net/lists/listinfo/jmol-users
> >
> >
> >
> >
> >--
> >Robert M. Hanson
> >Larson-Anderson Professor of Chemistry
> >St. Olaf College
> >Northfield, MN
> ><http://www.stolaf.edu/people/hansonr>
> http://www.stolaf.edu/people/hansonr
> >
> >
> >If nature does not answer first what we want,
> >it is better to take what answer we get.
> >
> >-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
>
> >------------------------------------------------------------------------------
> >Time is money. Stop wasting it! Get your web API in 5 minutes.
> >www.restlet.com/download
> >http://p.sf.net/sfu/restlet
> >_______________________________________________
> >Jmol-users mailing list
> >[email protected]
> >https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
> ------------------------------------------------------------------------------
> Time is money. Stop wasting it! Get your web API in 5 minutes.
> www.restlet.com/download
> http://p.sf.net/sfu/restlet
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Time is money. Stop wasting it! Get your web API in 5 minutes.
www.restlet.com/download
http://p.sf.net/sfu/restlet
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
