draw polygon 6 @1 @3 @6 @10 @15 @16 3 [0 1 2] [2 3 4] [4 5 6]
does something like that. You just have to list your atoms first, then list
the faces.
On Fri, Jun 6, 2014 at 10:42 AM, Sridhar Neelamraju <
[email protected]> wrote:
> It would great to have it work like the polyhedra command where one could
> specify the coordination, distance and atoms to connect. However, Jmols
> inherent advantage is that we can use predefined scripts that are fairly
> straightforward to write. So, it really is not as much of a hassle.
>
>
>
>
> On 5 June 2014 02:34, Robert Hanson <[email protected]> wrote:
>
>> Yes, it's not very forgiving, is it? You need to list all the vertices
>> first, then reference the faces. Good idea to have it allow interspersed
>> groups, though.
>>
>>
>>
>> On Wed, Jun 4, 2014 at 12:03 PM, Sridhar Neelamraju <
>> [email protected]> wrote:
>>
>>> Dear all,
>>> I am looking to connect atoms on my molecule with polygons. Triangles
>>> and squares, mostly.
>>>
>>> I get a triangle with
>>>
>>> draw polygon 3 {x1 y1 z1} {x2 y2 z2} {x3 y3 z3} 1 [0 1 2 6]
>>>
>>> I get a square with
>>>
>>> draw polygon 4 {x1 y1 z1} {x2 y2 z2} {x4 y4 z4} {x5 y5 z5} 2 [0 1 2 6]
>>> [0 3 2 6]
>>>
>>> To plot both together, I use:
>>>
>>> draw polygon 3 {x1 y1 z1} {x2 y2 z2} {x3 y3 z3} 1 [0 1 2 6] 4 {x1 y1
>>> z1} {x2 y2 z2} {x4 y4 z4} {x5 y5 z5} 2 [0 1 2 6] [0 3 2 6]
>>>
>>> At this point, jmol crashes. I am using jmol.14.0.11. Is there a way
>>> around this?
>>>
>>> Would appreciate a response. Thank you for your help.
>>>
>>> Sridhar
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Learn Graph Databases - Download FREE O'Reilly Book
>>> "Graph Databases" is the definitive new guide to graph databases and
>>> their
>>> applications. Written by three acclaimed leaders in the field,
>>> this first edition is now available. Download your free book today!
>>> http://p.sf.net/sfu/NeoTech
>>> _______________________________________________
>>> Jmol-users mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Learn Graph Databases - Download FREE O'Reilly Book
>> "Graph Databases" is the definitive new guide to graph databases and their
>> applications. Written by three acclaimed leaders in the field,
>> this first edition is now available. Download your free book today!
>> http://p.sf.net/sfu/NeoTech
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> ------------------------------------------------------------------------------
> Learn Graph Databases - Download FREE O'Reilly Book
> "Graph Databases" is the definitive new guide to graph databases and their
> applications. Written by three acclaimed leaders in the field,
> this first edition is now available. Download your free book today!
> http://p.sf.net/sfu/NeoTech
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Learn Graph Databases - Download FREE O'Reilly Book
"Graph Databases" is the definitive new guide to graph databases and their
applications. Written by three acclaimed leaders in the field,
this first edition is now available. Download your free book today!
http://p.sf.net/sfu/NeoTech
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
