Jim, i want to load this plugin and try it. Do i need any file loaded previuos
to this plugin or is the plugin to do all the work? Pino
----Messaggio originale----
Da: jim.hu.bio...@gmail.com
Data: 07/06/2014 18.31
A: "pino.stricc...@libero.it"<pino.stricc...@libero.it>,
<jmol-users@lists.sourceforge.net>
Ogg: Re: [Jmol-users] R: jsmol wordpress plugin
Henry and Pino's enthusiastic replies stimulated me to share my code even in
it's current state, so I've now put it on GitHub.
https://github.com/jimhu-tamu/wordpress/tree/master/plugins/jsmol2wp
Note that if you discovered the github repo via the help link before this
email, there were were two important changes:- I got rid of the js directory
and use the nojq version of the minified JSmol script, as the current Wprdpress
ships with JQuery 1.11 already. - I changed the syntax for custom buttons.
Previously I delimited multiple buttons with a single | but I realized that
these could occur in the interior of valid scripts. So I changed the delimiter
to |||, which I hope never occurs in valid JMol scripts.
When custom script buttons are created, I add a reset button to try to get back
to how it was when it was loaded. I don't think I'm doing it right. I tried to
do this by saving and restoring state, but didn't get that to work either,
probably because of where I put things.
I also am wondering why I can't get the menu to pop up when I click the applet
with the control key held down. I'm guessing that there is a URL path problem.
I'd love to have others try it and let me know what breaks and what they would
like to see changed or added. I will also add something to the wiki.
Jim
On Jun 7, 2014, at 3:33 AM, pino.stricc...@libero.it wrote:That is great. My
pages are not done using a plugin that is really the best solution for
wordpress because you dont have to transfer all the links and sripts to the new
template. Thanks Jim
Pino
----Messaggio originale----
Da: jim.hu.bio...@gmail.com
Data: 06/06/2014 20.21
A: <jmol-users@lists.sourceforge.net>
Ogg: [Jmol-users] jsmol wordpress plugin
Hi All,
As part of my inaugural post to this list, I first wanted to thank Robert and
the rest of the Jmol/Jsmol team for providing Jmol and Jsmol and also thank
Jaime Prilusky for making the jsmol mediawiki extension available. I've now
deployed it on EcoliWiki.
The main reason for joining is to let everyone know that I am working on a
wordpress plugin for jsmol. I saw that Pino Striccoli had it working on
wordpress, but I didn't think he was doing it as a plugin.
I have it mostly working here:
http://biochemistryweb.tamu.edu/biobiodev/testing-jsmol-post/
Mine works by putting a shortcode in a page or post, e.g.
This works by putting a shortcode into a post or page
[jsmol pdb='4I36' caption='Crystal structure of the <em>B.
stearothermophilus</em> phosphofructokinase mutant D12A See <a
href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3785328/";>Mosser et al</a>.']
This was done mostly by taking the simple.htm file as a template and doing
string substitutions on it, and using wordpress' wp_enqueue_script() function
to load the main JSmol.min.js . I'll make it available after I do some more
work on it, but I wanted to share that I'm doing it. So far it support having
more than one viewer per page, and can use either files from rscb.org/pdb or
files that are uploaded locally (the plugin modifies the allowed mime types in
Wordpress to add chemical/pdb). I want to add the ability to add buttons for
custom scripts.
I also wanted to ask what should be included in the files to give proper credit
to the jsmol project.
Best,
Jim Hu
=====================================
Jim Hu
Professor
Dept. of Biochemistry and Biophysics
2128 TAMU
Texas A&M Univ.
College Station, TX 77843-2128
979-862-4054
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=====================================
Jim Hu
Professor
Dept. of Biochemistry and Biophysics
2128 TAMU
Texas A&M Univ.
College Station, TX 77843-2128
979-862-4054
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