Hello,
I have replaced all those lines with only JSmol.min.js, and the same error
("TypeError: f is undefined") appears when trying to load 2YJP and 1CKU.
As for the water, I understand. I will make a note to the user that solvent
hydrogens that are not in the original PDB will not be displayed because of
that.
On Wed, Jun 11, 2014 at 12:11 PM, Angel Herráez <angel.herr...@uah.es>
wrote:
> Hello Vinushka
>
> Your JS code is outdated. Since you are using 14.0.17, you should
> just call one JS file:
>
> " <script type="text/javascript"
> src="/charmming/js/jsmol/JSmol.min.js"></script>
>
> Please try that and see if the error goes away.
>
>
> > Also, I have noticed that pdbaddhydrogens does not add hydrogens to
> > water oxygens. Is this intended behavior?
>
> Probably. There is no way how you can imagine what the direction of
> bonds to those Hs would be, right?
>
>
>
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Find What Matters Most in Your Big Data with HPCC Systems
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Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
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