Bob,
I tried to send the state script, but it was too large. Here's the only
error that I see:
script compiler ERROR: command expected
----
<<<<
It looks like it's choking on the append portion of the state script.
Otis
On Sat, Jul 12, 2014 at 12:31 PM, Robert Hanson <hans...@stolaf.edu> wrote:
> I don't think that is the issue. But this is very inefficient:
>
>
> for (var i = 1; i < {*}.length +1; i++){ {*}[i].atomno = i }
>
> What you want there is:
>
> var n = {*}.length; for (var i = 1; i <= n; i++){ {*}[i].atomno = i }
>
> Still that should not be it. Aren't you getting some sort of error
> messages?
>
> I would use
>
> set debugscript
>
> first, then run that and see what it gives.
>
> Bob
>
>
>
>
>
>
>
>
>
>
> On Wed, Jul 9, 2014 at 10:58 PM, Otis Rothenberger <osrot...@chemagic.com>
> wrote:
>
>> Bob,
>>
>> I use the following script to duplicate a model in the Jmol window:
>>
>> scpt = 'center;var mod2 = "' + Jmol.getPropertyAsString(jmolApplet0,
>> "extractModel") + '";';
>> scpt += 'set echo top left;echo;set appendNew false;var z=' + bbMax() +
>> ';';
>> scpt += 'select *;translateSelected {@z @z 0};load APPEND "@mod2";';
>> scpt += 'hover "";select *;wireframe 0.15;spacefill 23%;boundbox
>> {*};centerat boundbox;minimize CLEAR;';
>> scpt += 'for (var i = 1; i < {*}.length +1; i++){ {*}[i].atomno = i }';
>> Jmol.script(jmolApplet0, scpt);
>>
>> bbMax() simply calculates the longest dimension of the bound box. This
>> all works, BUT the resulting model pair has a Jmol state problem. I can
>> write a state, but it will not restore. Is my atomno renumbering screwing
>> this up?
>>
>> The renumbering may seem strange, but I'm working with edited models, and
>> the renumbering prevents atomno overlap produced by duplicating edited
>> models.
>>
>> This is not a huge problem. I'm just curious if the renumbering is the
>> guilty party.
>>
>> Otis
>>
>> --
>> Otis Rothenberger
>> o...@chemagic.com
>>
>>
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>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Department of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
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>
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>
--
Otis Rothenberger
o...@chemagic.com
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