Yes. I got the permission issue resolved. 

J. Philip Bays
Emeritus Professor of Chemistry
Saint Mary's College
Norte Dame, IN

Sent from my iPad

> On Sep 3, 2014, at 11:55 AM, "Otis Rothenberger" <osrot...@chemagic.com> 
> wrote:
> 
> Phil,
>  
> I don't know about the local issue, but both URL's open for me in Chrome and 
> Safari (Version 7.0.6 (9537.78.2)) on Mavericks: OS X 10.9.4 (13E28)
>  
> Otis
>  
> --
> Otis Rothenberger
> Department of Chemistry
> Illinois State University Normal, IL 61790-4160
> http://chemagic.org
>  
> From: "Philip Bays" <pb...@saintmarys.edu>
> Sent: Wednesday, September 03, 2014 10:17 AM
> To: "Jmol Jmol" <jmol-users@lists.sourceforge.net>
> Subject: Re: [Jmol-users] Local File Access
>  
> Thanks.  That solves the issue for Safari and newer jmol versions.   However, 
> I still do not understand the problem in this sense: the release of 6/28 
> works fine without having to make the file restrictions change, but the 8/25 
> version does not. Same version of OS and Safari.  Has something changed in 
> jmol in the intervening time that causes that, or is it something else?
>  
> In addition, I have moved copies of booth versions to my website.  In this 
> case, accessing from home,6/28/test2 works, but I get a permissions error for 
> 8/25.   Still working to see what is different.
>  
>  
> The links I am trying to access via the web are: 
> www.saintmarys.edu/~pbays/jmol0628/jsmol/test2.htm
> www.saintmarys.edu/~pbays/jmol0825/jsmol/test2.htm
>  
> Phil
>  
>  
>> On Sep 3, 2014, at 9:07 AM, Otis Rothenberger <osrot...@chemagic.com> wrote:
>>  
>> ?Hi Phil,
>>  
>> ?In Safari Preferences, go to Advanced and check "Show Develop menu in menu 
>> bar."
>>  
>> In the resulting Develop toolbar drop-down, there is a Disable Local File 
>> Restrictions check toggle item. Select this if it is not checked.
>>  
>> On the Chrome (37.0.2062.94 on Mavericks) issue that I wrote about 
>> yesterday, there are two ways to avoid the terminal directly if you have 
>> some familiarity with the Apple Automator.
>>  
>> Open Automator. Choose Application. Select Utilities. Drag Run AppleScript 
>> to the Automator window. Copy/paste one of the following scripts into the 
>> resulting text window. Save the app to desktop. Double click OR Drag/Drop 
>> htm file depending on approach you selected.
>>  
>> FOR DOUBLE CLICKABLE AUTOMATOR APP
>>  
>> on run {input, parameters}
>> do shell script "open -a /Applications/Google\\ Chrome.app --args 
>> --allow-file-access-from-files"
>> 
>> end run
>> 
>> FOR DRAG/DROP AUTOMATOR APP
>>  
>> on run {input, parameters}
>> tell application "Finder"
>> 
>> set filename to input as text
>> 
>> set filepath to POSIX path of filename
>> 
>> end tell
>> 
>> do shell script "open /Applications/Google\\ Chrome.app --args 
>> --allow-file-access-from-files file:///" & filepath
>> 
>> end run
>> 
>> Again, it is most important that Chrome is closed when you do this. If 
>> Chrome is open, neither script will work properly. Late night last night. 
>> What a weird scripting language! I have not dealt with AppleScript since my 
>> first Macintosh LONG ago.
>>  
>> Otis
>>  
>>> On Mon, Sep 1, 2014 at 10:07 AM, Philip Bays <pb...@saintmarys.edu> wrote:
>>> I think I was the one who raised this issue (#3).  Perhaps I was not clear, 
>>> or perhaps I am dense. 
>>>  
>>> I am not talking about the Java applet.   I am trying to launch test2 in 
>>> Safari with JSmol by double clicking it.  The applet tries to load but then 
>>> fails.   I see the opportunity in Safari...Preferences…Security to white 
>>> list various plug-ins: things like Flash, Adobe, Quicktime, etc.   I 
>>> believe this is where Java also appears if it is on the system.  But I see 
>>> no preference for JSmol except to “enable javascript”.
>>>  
>>> What am I missing?
>>>  
>>> Phil
>>>  
>>>  
>>>> On Wed, Aug 20, 2014 at 1:25 PM, Robert Hanson <hans...@stolaf.edu> wrote:
>>>> Issue #3  JSmol/Java applet will not run in Safari for local pages  
>>>> (Mavericks OS 10.9.4)
>>>>  
>>>> Solution: Open a local page accessing the JSmol/Java and then using 
>>>> Safari...Preferences...Security, enable local file reading
>>>> 
>>>> See http://sourceforge.net/p/jmol/mailman/message/31570102/
>>>>  
>>>> Outcome: Reloading the page, you should get the standard alerts about 
>>>> running Java applets, then the Jmol applet will start.
>>> Philip Bays
>>> Emeritus Professor of Chemistry
>>> Saint Mary's College
>>> Notre Dame, IN 46556
>>> pb...@saintmarys.edu
>>>  
>>> 
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>>  
>>  
>> --
>> Otis Rothenberger
>> o...@chemagic.com
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>  
> Philip Bays
> Emeritus Professor of Chemistry
> Saint Mary's College
> Notre Dame, IN 46556
> pb...@saintmarys.edu
>  
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