Well, one thing I forgot was to remove a debug comment that is printing
every integer read. So that will slow things down VERY much in JSmol/HTML5.
Sorry about that.
But also it looks like in applet1 you have
sosurface1 created with cutoff=0.5 min=0 max=0.4541953206062317;
so you just need to remove that cutoff:
isosurface downsample 2 *cutoff 0.5* boundbox 'data/1akeA_10A.mrc' mesh
nofill
On Wed, Sep 10, 2014 at 6:44 AM, <chris.w...@stfc.ac.uk> wrote:
> Hmm… I’ve uploaded this new version of JSmol, and I now get an error
> with the original 1cbs.cif example, and the map for my 2 example fails to
> load – “loading map file…” displays indefinitely:
> http://www.ccpem.ac.uk/jsmol_test/cutofftest.htm - is there something
> else I’ve missed?
>
>
>
> Chris
>
>
>
>
>
> *From:* Robert Hanson [mailto:hans...@stolaf.edu]
> *Sent:* 08 September 2014 20:28
> *To:* jmol-users@lists.sourceforge.net
> *Subject:* Re: [Jmol-users] Setting cutoff with some maps causes map to
> fail to load
>
>
>
> rebooting on this issue after fixing a possibly related problem --
> http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.08b.zip
>
>
> Jmol.___JmolVersion="14.3.7_2014.09.08"
>
> bug fix: binary document reader can skip bytes if an http connection
> fails to deliver the full set of requested bytes in one operation
> (methods used only by nonstandard MRC files and PyMOL session
> files)
>
>
>
>
> ------------------------------------------------------------------------------
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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