Dave, if you do not have coordinates, how would you expect Jmol to position the atoms? Note that when Jmol reads Smiles, I think it does not build the molecule, but goes to a server that will provide it with 3D coords.
I think that instead of loading a model file with your format, you might achive it using script and maybe the data command to **build** the molecule inside Jmol. But the question about what coordinates to use is there. ------------------------------------------------------------------------------ Want excitement? Manually upgrade your production database. When you want reliability, choose Perforce Perforce version control. Predictably reliable. http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
