BS Viewer.getAllAtoms() will take care of that for you. Just AND that
result with the bit set of atoms in question, and it will limit that set of
atoms to only those that are not deleted.

Bob



On Sun, Sep 28, 2014 at 6:33 AM, N David Brown <hubd...@gmail.com> wrote:

> Ok thanks Bob.
>
> Is there a way to identify programmatically that the atoms have been
> deleted, besides simply listening for delete commands?
>
> On 28 September 2014 04:27, Robert Hanson <hans...@stolaf.edu> wrote:
>
>> Deleted atoms are marked deleted, but they are not removed from the
>> model. Only when you delete a whole model using *zap 1.1*, for example.
>> are the atoms for a model actually removed from memory.
>> ​
>>
>
>


-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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