Question: What is the expected outcome of an isosurface command for ligands in a model with several ligands?
I am doing this, Jmol app 14.2.3: load =1hho; cartoon only; select ligand; spacefill 50%; // there are 3 ligands isosurface select(ligand) molecular; /* only 2 of the 3 ligands get a surface -- why? [HEM]143:A no [HEM]143:B yes [PO4]142:A yes */ Same with other models, load =2ejf cartoon only; select ligand; spacefill 50%; // there are 4 ligands isosurface select(ligand) molecular; /* [BTN]1400:C yes [BTN]1401:A no [BTN]1402:B yes [GOL]3001:B no */ Also with my preferred command variant, isosurface select(ligand) ignore(not ligand) molecular; // in this case, 3 out of 4 surfaces for 2ejf Any hints? We were thinking today of tools for ligand highlighting and for rendering multiple surfaces in Proteopedia when we hit this problem. ------------------------------------------------------------------------------ Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
