Eric and Luciano,
I believe Eric is quite correct on this point. To avoid some browser crash
problems that I was having, I use JSmol.min.js, and I don't think
jmolEvaluate is available via this route (Bob???), hence my use of
callbacks.
My use of JSmol.min.js goes back a way. I'm not sure if this is still
something that I need to do.
Otis
----------------------------------------
From: "Eric Martz" <ema...@microbio.umass.edu>
Sent: Sunday, January 18, 2015 5:21 PM
To: "Luciano Abriata" <luciano_abri...@yahoo.com>,
jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] JSmol: how to put a protein's sequence into a
javascript variable
Dear Luciano,
Here is my suggestion. I may not have all this right and I am certainly
willing to be corrected and learn from others!
When javascript wants to get information from Jmol about the currently
loaded model(s), I think the best method is, in javascript:
jmolEvaluate("jmol expression");
This function is defined in Jmol2.js, packaged with the Jmol download. The
value of the jmol expression will be returned to javascript.
This Jmol command reports the sequence in one-letter code, separately for
each chain:
print {protein}.find("sequence")
So in javascript, I think this will work (but I haven't tested it):
jmolEvaluate("{chain=a}.find(\"sequence\")");
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