Good to see this tested!
Jmol will only mutate one residue at a time. You were not specific, so it
defaults right now the last one (closest to the last atom in the last
model, favoring that over an attempt to add an atom to a model that is not
the last one. Models are blocks of atoms, and I don't have a way to shift
all these pointers all over the place.
mutate {92:D} TYR
mutate {92:B} TYR
should do it. I guess you could do this:
mutate his92 tyr
mutate his92 tyr
and they would go in order.
Bob
On Wed, Jan 28, 2015 at 3:25 PM, Jeffrey Cohlberg <
jeffrey.cohlb...@csulb.edu> wrote:
> I just tried the new MUTATE command.
>
> I loaded 4HHB (deoxyhemoglobin, A and C are alpha chains, B and D are beta
> chains)
> then typed:
>
> select his 92 [that¹s the proximal histidines of the two beta chains]
> [20 atoms were selected, confirming two histidines, then I typed:]
> mutate 92 tyr
>
> The result was that the his was changed to tyr on the D chain (very cool!)
> but not on the B chain.
>
> Why not both chains?
>
> Jeff
> --
> Dr. Jeffrey Cohlberg
> Department of Chemistry and Biochemistry
> California State University, Long Beach
> 1250 Bellflower Blvd
> Long Beach, CA 90840
> 562-985-4944 FAX 775-248-1263
> cohlb...@csulb.edu
>
>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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