On 01/28/2015 06:21 PM, Robert Hanson wrote: > The idea of a MUTATE command has been rattling around in my brain for a > while, and last night it hit me that we have all the pieces to do this > right -- structural comparison using Jmol bioSMARTS, flexible fit using > compare() and ROTATE BRANCH, atom alignment using COMPARE...ROTATE > TRANSLATE, easy ways to reconfigure bonds with CONNECT, and a very > serviceable MINIMIZE command. A few added tweaks, and nine hours work, and > what do you know? Jmol has a new command today! > > Do try it out! > > Bob > > http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.12_2015.01.28.zip > When I try to run this Jmol version within the 'Jena3D Viewer' the HTML5 version freezes almost completely without error message (http://jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1deh&APPLET=html5&JMOLVERSION=14.3.12_2015.01.28)
and the Java version (http://jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1deh&APPLET=java&JMOLVERSION=14.3.12_2015.01.28) using 'IcedTea Java' doesn't freeze but stops in the middle of the initializing script with the following error message: script ERROR: java.lang.NoSuchMethodError: org.jmol.script.SV.oValue(Lorg/jmol/script/SV;)Ljava/lang/Object; I could identify the following commands from the initializing script that result in the same error message: ca2 = {1:A.CA/1}.xyz + {1:A.CA/1}.xyz - {2:A.CA/1}.xyz; draw boundary_1_A PLANE PERP 180 @ca2 (1:A.CA/1) translucent 0.2 red; Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
