On 02/05/2015 03:09 AM, Jing Xie wrote: > Hi, > > I am able to use command line to execute jmol.jar and execute some jmol > command to get some output files. For example, I can get atomIno from the > comman " C:\MAMP\htdocs\Kinari2_Resources\External\jmol>java -jar > "jmol.jar" -x -n "1000041.cif" -J "getProperty atomInfo" -o> > "outputAtomInfo.txt" " . But I think this output file is based on original > visulization, i.e. "load xxxxxxx.cif". Is there some code to get atomInfo > from "load xxxxxxx.cif packed" visualization? > Moving the load command into the '-J' option should work:
java -jar "jmol.jar" -x -n -J 'load 1000041.cif packed; getProperty atomInfo' > outputAtomInfo.txt Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
