Exactly. That's why you need the -J option in this case. So that "$CC" is being passed to the script as a parameter. If you want to also load that file, use:
java -jar "%JMOL_HOME%\JmolData.jar" -ion $CC -J "headless.spt('$CC')" alternatively, you can recover "$CC" as molUnit = getProperty("auxiliaryInfo.models[1].dbName") and, aslo, you don't need [ml] there. just use [0]. It means "the last position" Bob
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