Thanks, Eric.
On Sun, Aug 9, 2015 at 12:00 PM, Eric Martz <ema...@microbio.umass.edu>
wrote:
> Documentation for {*}.identify says:
>
> for a PDB/mmCIF file, same as [%[group]]%r:%[chain] %%%[altloc]/%[model]
> #%[atomno].
>
> 1. %r is hard to find. I suggest adding to the description for resno:
>
>
See also %r (near the bottom of this table).
>
>
good idea. I have also found a name for that: *seqcode*. But that is not in
14.2 yet.
> 2. %atomName is missing from the above description. Also there is no space
> before altloc. I think the description should be:
>
> for a PDB/mmCIF file, same as
> [%[group]]%r:%[chain]*.%[atomName]*%%%[altloc]/%[model]
> #%[atomno].
>
>
I've modified that text extensively. Take a look.
for a PDB/mmCIF file, a label such as *[ILE]7^1:A.CD1%A/3 #47*, which
includes the group ([ILE]), residue number with optional insertion code
(7^1), chain (:A), atom name (CD1), alternate location if present (%A), PDB
model number (/3, for NMR models when one file is loaded; /file.model such
as /2.3 if more than one file is loaded), and atom number (#47). For
non-PDB data, the information is shorter -- for example, *H15/2.1 #6*,
indicating atom name (H15), full file.model number (/2.1), and atom number
(#6). If only a single model is loaded, %[identify] does not include the
model number.
Bob
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