It is not. It is better to use set pdbAddHydrogens load xxx.pdb
Of course, if you don't have a PDB file, that's not going to help you. On Wed, Aug 19, 2015 at 12:55 PM, Ron Mignery <remign...@gmail.com> wrote: > I notice that when I apply the "calculate hydrogen" command to a > polypeptide, the N hydrogens are not in the peptide plane. Is this correct > chemically speaking? > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Department of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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