Hi all,

I am looking for some speedup tips for Jmol scripting in JSmol/HTML5.

The speed difference between JSmol/Java and JSmol/HTML5 for graphical 
operations like rotation and zooming seems to be about 10 times or less 
in Firefox and Chrome (if you don't consider the recent rotation speed 
problems in Chrome).

Unfortunately the difference for Jmol scripting seems to be much higher 
in my experience: about 50-70 times.

If I load for example 3 TSV (tab separated value) format files with 
overall about 34,000 lines, JSmol/Java needs about 26 seconds for 
laoding and parsing the data and putting it into a multi-level hash 
structure. JSmol/HTML5 needs about 1700 seconds instead.

I already tried to write the final data structure into a file with 
'write VAR ...' and read it in again as a script (after adding a proper 
variable assignment) but this already took in Java endlessly (I stopped 
waiting after more than an hour...).

Q: Does anyone have any other ideas that might speed up this process?

Regards,
Rolf


-- 

Rolf Huehne
Postdoc

Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany

Phone:   +49 3641 65 6205
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E-Mail:  rhue...@leibniz-fli.de
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