> Should I have to include any javascript or jar 
> files related to SMILES? 
> Currently, I use <script type="text/javascript" 
> src="JSmol/JSmol.min.js"></script>.

No, that's enough, as long as you are also definining properly the path to the 
"j2s" folder inside the "Info" variable

I am not sure what may be the effect of a hidden JSmol object. The browser 
may be not creating it. Try avoiding display:none for your testing
<div id="app" style="display: block;"></div>


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