Thanks, Eric. Sorry for taking so long. It was a good challenge tracking
this down. And fixing it turned up a few other issues. The simple hack
solution is to add REFRESH commands among those commands you have, but
really that should not be necessary, and isn't any longer.
http://chemapps.stolaf.edu/jmol/zip/jmol-14.4.3_2016.02.18.zip
There are still perhaps a few things that may not be obvious:
-- SLAB ON is definitely required prior to slab set or depth set.
-- SLAB RESET or SLAB PLANE NONE are required to get out of this mode.
-- The variables _slabPlane and _depthPlane are always available, whether
or not slab is ON. So you can also use
slab PLANE @_slabPlane
or, for example:
slab 50; depth 40;slab plane @_slabPlane;depth plane @_depthPlane
to do the same as SLAB SET/DEPTH SET. In that case you do not need SLAB ON.
SELECT VISIBLE now properly refers to these non-slabbed atoms.
Bob
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