Thanks, Bob!
Andreas
On Wednesday, March 23, 2016, Robert Hanson <hans...@stolaf.edu> wrote:
> I have made changes to Jmol and JSmol to direct PDB default loading to be
> from files.rcsb.org
>
> see
> https://sourceforge.net/projects/jmol/files/Jmol/Version%2014.4/Version%2014.4.4/
>
> * Download Jmol-14.4.4_2016.03.24-binary.zip (61.2 MB)
> <https://sourceforge.net/projects/jmol/files/latest/download?source=files>*
>
>
>
> On Wed, Mar 23, 2016 at 10:53 AM, Dave Howorth <dhowo...@mrc-lmb.cam.ac.uk
> <javascript:_e(%7B%7D,'cvml','dhowo...@mrc-lmb.cam.ac.uk');>> wrote:
>
>> I'm probably way behind the times but I only just noticed that the path
>> to RCSB files has changed. I loaded an mmCIF file into Jmol and noticed
>> in Firebug that the request got redirected. So I went to update my
>> jmolscript, which started like this:
>>
>> script: 'set loadFormat "http://www.rcsb.org/pdb/files/%FILE.cif";;'
>> + 'load =' + pdbid + ';',
>>
>> so it now reads:
>>
>> script: 'set loadFormat "http://files.rcsb.org/view/%FILE.cif";;'
>> + 'load =' + pdbid + ';',
>>
>> But when I run the script now I get an error box saying:
>>
>> Error connecting to server: http://your.server.here
>> /jsmol.php?call=getRawDataFromDatabase&database=_&query=http%3A%2F
>> %2Ffiles.rcsb.org%2Fview%2F3qq5.cif
>>
>> I can retrieve the file http://files.rcsb.org/view/3qq5.cif with wget,
>> so I'm fairly sure I've got the correct URL and the problem is somewhere
>> in my usage of Jmol.
>>
>> Hopefully somebody can advise me. I've copied Andreas just in case this
>> is somehow connected with their changes.
>>
>> Cheers, Dave
>>
>>
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>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Department of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
--
-----------------------------------------------------------------------
Dr. Andreas Prlic
RCSB PDB Protein Data Bank
Technical & Scientific Team Lead
University of California, San Diego
Editor Software Section
PLOS Computational Biology
BioJava Project Lead
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