I have been looking at different surfaces generated by JSmol and I've hit a
problem with getting a closed solvent excluded surface. I have been looking
at the PDB entry 4OO8. I get a nice closed solvent accessible surface when
I use:
isosurface ignore(!(chain=A)) sasurface 1.4
But if I then try and generate the solvent excluded surface using:
isosurface ignore(!(chain=A)) solvent 1.4
the surface is not completely closed but has several holes in it. With the
other chains in 4OO8 the solvent excluded surface for chain B has holes in,
but chain C gives a properly closed surface.
Is there any way I can consistently generate a closed solvent excluded
surface?
Any help will be much appreciated.
Thanks
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