Dear users,
I face a technical difficulty in using the « set pickcallBack ‘jmolscript’ »
facility
of jMol.
First of all, my application is:
- a java code embedding an object jmolLigPanel of JmolPanel type
- jMolPanel extends class JPanel and the associated constructor simply executes
the line:
viewer = jmolViewer.allocateViewer(this, new smarterJmolAdapter, null,
null, null, null, null);
- inside my java application, the following java instruction is called :
jmolLigPanel.viewer.script(« set pickcallback ‘jmolscript:
bondPickingAction.spt' »);
- I have written a « jmol program » (in file bondPickingAction.spt), that has
to be run when the user clicks
on one bond in the jMolPanel interface.
- This spt file is located in the main directory of my java application
- to give an idea: getProperty(« varinfo ») gives: variable.defaultdirectory «
/Users/henon/Documents/workspaceJBox/JBox »
(where I have put the file bondPickingAction.spt).
I currently use the Eclipse IDE to develop this java application.
When I run my java application from the Eclipse environmenent, all
works perfectly, and the corresponding Jmol actions are performed when
I click on chemical bonds.
However, this does not work any longer when I use the runnable jar
built from Eclipse. I guess the problem is that the java command
jmolLigPanel.viewer.script(« set pickcallback ‘jmolscript:
bondPickingAction.spt' »);
is passed to the jmol environement which does not know where to find
the bondPickingAction.spt file in the jar archive.
I tried different ways to tell the runnable archive where to find this spt file,
but it does not work. Precisely, I put this file in the bin/, in the /lib,
in the main directories of the jar archive.
When I extract the jar archive to have a look, the file bondPickingAction.spt
is present.
Does anyone already met this kind of problem before with jmol ?
How could I do to tell jmol where to find the spt script
when using the « set pickcallback » instruction ?
Or maybe this specific Jmol function could be declared
in a userJmolFunction.spt file instead (rather than in the separate
bondPickingAction.spt file)
that the java application would read first ?
Is it possible to call a jmol function rather than a file
within the set pickcallback instruction ?
Any idea or any other way to proceed will be appreciated !
Thanks in advance !
Eric
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