Hello Eugene > I've found the answer really helpful but using magic word "jmolscript:" > as a second line one loose the possibility of multi models in a single > XYZ file feature which is very useful in analysis of phonon vibrations.
I believe the 2nd line is meant for comments, that's why Jmol can accept scripts in there. I do not remember the spec for multimodel XYZ. There has to be a solution. It is indeed possible. For example, this file https://sourceforge.net/p/jmol/code/HEAD/tree/trunk/Jmol-datafiles/animation s/Met_aq.movie.xyz has 33 models. In the second line, it has Energy = -800.7259803711 When I edit that to be: Energy = -800.7259803711 jmolscript:select _S & */4;color orange; the sulphur atom in the 4th model changes its color as desired > And there is no possibility to create supercell with command > > load "" {2 2 2} Yes, load "" means reload the last file. So you cannot use it until a file has been loaded. > Anyway I've found there is possible to run script with -s key. Good! > Running > JSmol in the browser does not seems acceptable also since I need main > menu to change distance units and other settings. But remember that everything that the top menu does is available with script commands. e.g. set measurementUnits nm ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
