I found  a solution. In the situation where there are models from multiple
files being saved, Jmol will give every atom a unique atom number. In this
way, the CONECT records at the end of the file will properly point to the
correct atoms.

Jmol.___JmolVersion="14.6.1_2016.07.24"

bug fix: write x.pdb for multimodel file does not work.

Will release later today.

Bob

On Sun, Jul 24, 2016 at 12:59 PM, Angel Herráez <angel.herr...@uah.es>
wrote:

> Dear Bob, that makes sense. I did not realize.
> Additional problem is that saved pdf file (with 1st model empty) cannot be
> loaded back into Jmol, it hangs with the spinning cursor forever.
>
>
>
> ------------------------------------------------------------------------------
> What NetFlow Analyzer can do for you? Monitors network bandwidth and
> traffic
> patterns at an interface-level. Reveals which users, apps, and protocols
> are
> consuming the most bandwidth. Provides multi-vendor support for NetFlow,
> J-Flow, sFlow and other flows. Make informed decisions using capacity
> planning
> reports.http://sdm.link/zohodev2dev
> _______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
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>



-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
patterns at an interface-level. Reveals which users, apps, and protocols are 
consuming the most bandwidth. Provides multi-vendor support for NetFlow, 
J-Flow, sFlow and other flows. Make informed decisions using capacity planning
reports.http://sdm.link/zohodev2dev
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