Thanks a lot, Nico! On Wed, Aug 24, 2016 at 6:22 PM, Nicolas Vervelle <nverve...@gmail.com> wrote:
> Ok, > > I've added a comment to request access for you. > https://issues.sonatype.org/browse/OSSRH-3633? > focusedCommentId=369327&page=com.atlassian.jira.plugin. > system.issuetabpanels:comment-tabpanel#comment-369327 > > Nico > > > On Wed, Aug 24, 2016 at 11:12 AM, Spencer Bliven <spencer.bli...@gmail.com > > wrote: > >> I volunteer to push releases to maven central. My OSS username is >> sbliven. >> >> To authorize someone, I believe that it is sufficient to add a comment to >> your OSS project ticket (https://issues.sonatype.org/browse/OSSRH-3633) >> requesting access for the username. >> >> -Spencer >> >> On Tue, Aug 23, 2016 at 10:55 PM, Robert Hanson <hans...@stolaf.edu> >> wrote: >> >>> not aware of any volunteers. >>> >>> On Tue, Aug 23, 2016 at 10:40 AM, Spencer Bliven < >>> spencer.bli...@gmail.com> wrote: >>> >>>> I just wanted to bump this thread. Any chance of getting a new maven >>>> maintainer added soon? >>>> >>>> Cheers, >>>> Spencer >>>> >>>> On Fri, Aug 12, 2016 at 10:19 AM, Spencer Bliven < >>>> spencer.bli...@gmail.com> wrote: >>>> >>>>> So I guess the next step that needs to happen is for Nico to request >>>>> that Mark get added to the OSS ticket. I haven't been an active Jmol >>>>> contributor, but I'd be happy to help with maintaining the maven package >>>>> if >>>>> you want to add me too (OSS user sbliven). >>>>> >>>>> -Spencer >>>>> >>>>> On Thu, Aug 11, 2016 at 11:29 PM, Robert Hanson <hans...@stolaf.edu> >>>>> wrote: >>>>> >>>>>> all checked in. >>>>>> >>>>>> On Thu, Aug 11, 2016 at 3:09 AM, Spencer Bliven < >>>>>> spencer.bli...@gmail.com> wrote: >>>>>> >>>>>>> Awesome. BioJava has good mmtf support, so if we can get the new >>>>>>> Jmol release into maven then MMTF might be a good exchange format for >>>>>>> passing structures to Jmol. We're currently stuck with using PDB and are >>>>>>> hurting from the limitations (e.g. on chain identifiers & number of >>>>>>> atoms). >>>>>>> >>>>>>> -Spencer >>>>>>> >>>>>>> On Wed, Aug 10, 2016 at 6:41 PM, Robert Hanson <hans...@stolaf.edu> >>>>>>> wrote: >>>>>>> >>>>>>>> Thanks, Spencer. I am in the process of releasing an important >>>>>>>> update for BioJava, as a matter of fact -- PyMOL 1.8 dump_binary PSE >>>>>>>> files >>>>>>>> and the new MMTF format from RCSB (which is FANTASTIC by the way...) >>>>>>>> >>>>>>>> Bob >>>>>>>> >>>>>>>> On Wed, Aug 10, 2016 at 9:25 AM, Spencer Bliven < >>>>>>>> spencer.bli...@gmail.com> wrote: >>>>>>>> >>>>>>>>> Hey, >>>>>>>>> >>>>>>>>> I also took a crack at getting the dist-release command to >>>>>>>>> complete, since it would be extremely nice to get BioJava using a more >>>>>>>>> recent version of Jmol. Using the latest trunk I got all steps to >>>>>>>>> complete >>>>>>>>> by modifying tools/jmol-sonatype.xml as you suggest to refer to " >>>>>>>>> ${Jmol.properties.Jmol.___JmolVersion}" in line 30. This creates >>>>>>>>> the build/dist-maven directory as desired. >>>>>>>>> >>>>>>>>> Right now only Tomas (plusik) and Nico (nicov) appear to be >>>>>>>>> authorized to upload to maven central. It would be great if some >>>>>>>>> additional >>>>>>>>> people (e.g. Mark, Bob, perhaps even myself if desired) could get >>>>>>>>> added to >>>>>>>>> this. Authorization is granted by adding a user to your OSS >>>>>>>>> project ticket (https://issues.sonatype.org/browse/OSSRH-3633). >>>>>>>>> >>>>>>>>> Any work towards a maven release is much appreciated. Let me know >>>>>>>>> if I can do anything to help with this. >>>>>>>>> >>>>>>>>> -Spencer >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> On Sat, Jul 30, 2016 at 4:39 AM, Robert Hanson <hans...@stolaf.edu >>>>>>>>> > wrote: >>>>>>>>> >>>>>>>>>> I'm not sure how ${Jmol.properties.___JmolVersion} would be the >>>>>>>>>> version number. In Build.xml it is: >>>>>>>>>> >>>>>>>>>> <property name="version" >>>>>>>>>> value="${Jmol.properties.Jmol.___JmolVersion}" >>>>>>>>>> /> >>>>>>>>>> <propertyregex property="version" >>>>>>>>>> override = "true" >>>>>>>>>> input="${version}" >>>>>>>>>> regexp='"' >>>>>>>>>> replace="" >>>>>>>>>> global="true" >>>>>>>>>> /> >>>>>>>>>> <echo message="version=${version}" /> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> So you are missing that regex process. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On Mon, Jul 25, 2016 at 9:18 AM, Mark Williamson <m...@mjw.name> >>>>>>>>>> wrote: >>>>>>>>>> >>>>>>>>>>> On 17/05/16 23:15, Robert Hanson wrote: >>>>>>>>>>> > Will be checking in Jmol 14.6 release as soon as I can. But >>>>>>>>>>> it's not a >>>>>>>>>>> Maven release. Someone else has to do that. >>>>>>>>>>> >>>>>>>>>>> Sorry for the delay in replying. I have been attempting to use >>>>>>>>>>> the ant >>>>>>>>>>> build script, tools/jmol-sonatype.xml, to build some artifacts >>>>>>>>>>> for >>>>>>>>>>> deployment to Maven central. Here is my protocol (apologies, I >>>>>>>>>>> am not >>>>>>>>>>> that familiar with ant and may have made some basic errors): >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> Preamble >>>>>>>>>>> --------- >>>>>>>>>>> 0) Start with a 64 bit install of Ubuntu 14.04.4 >>>>>>>>>>> >>>>>>>>>>> 1) Install the following packages >>>>>>>>>>> sudo apt-get install mvn libsaxon-java openjdk-7-jdk ant >>>>>>>>>>> >>>>>>>>>>> 2) Create ~/.jmol.build.properties file with contents >>>>>>>>>>> <property name="keystore.name" value="selfSignedCertificate" >>>>>>>>>>> /> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> Main >>>>>>>>>>> ---- >>>>>>>>>>> 1) Obtain the source code and extract >>>>>>>>>>> wget >>>>>>>>>>> http://heanet.dl.sourceforge.net/project/jmol/Jmol/Version%2 >>>>>>>>>>> 014.6/Version%2014.6.1/Jmol-14.6.1_2016.07.11-full.tar.gz >>>>>>>>>>> >>>>>>>>>>> tar xfvz Jmol-14.6.1_2016.07.11-full.tar.gz >>>>>>>>>>> cd jmol-14.6.1_2016.07.11 >>>>>>>>>>> >>>>>>>>>>> 2) Add a required jar to enable docs to be built >>>>>>>>>>> cp /usr/share/java/saxon.jar ./jars/ >>>>>>>>>>> >>>>>>>>>>> 3) Build jar target >>>>>>>>>>> ant jar >>>>>>>>>>> <input ~/.jmol.build.properties as the private property file > >>>>>>>>>>> >>>>>>>>>>> 4) Build dist target >>>>>>>>>>> ant dist >>>>>>>>>>> <input ~/.jmol.build.properties as the private property file > >>>>>>>>>>> >>>>>>>>>>> This fails with an error stating that “srcjsv does not exist” >>>>>>>>>>> and this >>>>>>>>>>> is because I do not have the source to JSpecView in the tree. >>>>>>>>>>> However, >>>>>>>>>>> if I should omit the line 1216 in build.xml, for the sake of >>>>>>>>>>> reaching >>>>>>>>>>> the next step: >>>>>>>>>>> >>>>>>>>>>> <!-- <fileset dir="srcjsv" />--> >>>>>>>>>>> >>>>>>>>>>> And proceed to this: >>>>>>>>>>> >>>>>>>>>>> ant -f ./tools/jmol-sonatype.xml dist-release >>>>>>>>>>> >>>>>>>>>>> Then, the following error is seen: >>>>>>>>>>> BUILD FAILED >>>>>>>>>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/tools/jmol- >>>>>>>>>>> sonatype.xml:91: >>>>>>>>>>> Warning: Could not find file >>>>>>>>>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/build/dist/ >>>>>>>>>>> jmol-${Jmol.properties.___JmolVersion}-javadoc.jar >>>>>>>>>>> to copy. >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> I am guessing that this seems to be some form of mis-parsing of >>>>>>>>>>> the >>>>>>>>>>> Jmol.properties.___JmolVersion in the build/dist directory? >>>>>>>>>>> >>>>>>>>>>> Do you have any suggestions on how to resolve this? >>>>>>>>>>> >>>>>>>>>>> Thanks, >>>>>>>>>>> >>>>>>>>>>> Mark >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> ------------------------------------------------------------ >>>>>>>>>>> ------------------ >>>>>>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth >>>>>>>>>>> and traffic >>>>>>>>>>> patterns at an interface-level. Reveals which users, apps, and >>>>>>>>>>> protocols are >>>>>>>>>>> consuming the most bandwidth. Provides multi-vendor support for >>>>>>>>>>> NetFlow, >>>>>>>>>>> J-Flow, sFlow and other flows. Make informed decisions using >>>>>>>>>>> capacity planning >>>>>>>>>>> reports.http://sdm.link/zohodev2dev >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> Jmol-users mailing list >>>>>>>>>>> Jmol-users@lists.sourceforge.net >>>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> -- >>>>>>>>>> Robert M. Hanson >>>>>>>>>> Larson-Anderson Professor of Chemistry >>>>>>>>>> St. Olaf College >>>>>>>>>> Northfield, MN >>>>>>>>>> http://www.stolaf.edu/people/hansonr >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> If nature does not answer first what we want, >>>>>>>>>> it is better to take what answer we get. >>>>>>>>>> >>>>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> ------------------------------------------------------------ >>>>>>>>>> ------------------ >>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> Jmol-users mailing list >>>>>>>>>> Jmol-users@lists.sourceforge.net >>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>>> ------------------------------------------------------------ >>>>>>>>> ------------------ >>>>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth >>>>>>>>> and traffic >>>>>>>>> patterns at an interface-level. Reveals which users, apps, and >>>>>>>>> protocols are >>>>>>>>> consuming the most bandwidth. Provides multi-vendor support for >>>>>>>>> NetFlow, >>>>>>>>> J-Flow, sFlow and other flows. Make informed decisions using >>>>>>>>> capacity >>>>>>>>> planning reports. http://sdm.link/zohodev2dev >>>>>>>>> _______________________________________________ >>>>>>>>> Jmol-users mailing list >>>>>>>>> Jmol-users@lists.sourceforge.net >>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> -- >>>>>>>> Robert M. Hanson >>>>>>>> Larson-Anderson Professor of Chemistry >>>>>>>> St. Olaf College >>>>>>>> Northfield, MN >>>>>>>> http://www.stolaf.edu/people/hansonr >>>>>>>> >>>>>>>> >>>>>>>> If nature does not answer first what we want, >>>>>>>> it is better to take what answer we get. >>>>>>>> >>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>>>>>>> >>>>>>>> >>>>>>>> ------------------------------------------------------------ >>>>>>>> ------------------ >>>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth >>>>>>>> and traffic >>>>>>>> patterns at an interface-level. Reveals which users, apps, and >>>>>>>> protocols are >>>>>>>> consuming the most bandwidth. Provides multi-vendor support for >>>>>>>> NetFlow, >>>>>>>> J-Flow, sFlow and other flows. Make informed decisions using >>>>>>>> capacity >>>>>>>> planning reports. http://sdm.link/zohodev2dev >>>>>>>> _______________________________________________ >>>>>>>> Jmol-users mailing list >>>>>>>> Jmol-users@lists.sourceforge.net >>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> ------------------------------------------------------------ >>>>>>> ------------------ >>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and >>>>>>> traffic >>>>>>> patterns at an interface-level. Reveals which users, apps, and >>>>>>> protocols are >>>>>>> consuming the most bandwidth. Provides multi-vendor support for >>>>>>> NetFlow, >>>>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity >>>>>>> planning reports. http://sdm.link/zohodev2dev >>>>>>> _______________________________________________ >>>>>>> Jmol-users mailing list >>>>>>> Jmol-users@lists.sourceforge.net >>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> Robert M. Hanson >>>>>> Larson-Anderson Professor of Chemistry >>>>>> St. Olaf College >>>>>> Northfield, MN >>>>>> http://www.stolaf.edu/people/hansonr >>>>>> >>>>>> >>>>>> If nature does not answer first what we want, >>>>>> it is better to take what answer we get. >>>>>> >>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>>>>> >>>>>> >>>>>> ------------------------------------------------------------ >>>>>> ------------------ >>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and >>>>>> traffic >>>>>> patterns at an interface-level. Reveals which users, apps, and >>>>>> protocols are >>>>>> consuming the most bandwidth. Provides multi-vendor support for >>>>>> NetFlow, >>>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity >>>>>> planning reports. http://sdm.link/zohodev2dev >>>>>> _______________________________________________ >>>>>> Jmol-users mailing list >>>>>> Jmol-users@lists.sourceforge.net >>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>> >>>>>> >>>>> >>>> >>>> ------------------------------------------------------------ >>>> ------------------ >>>> >>>> _______________________________________________ >>>> Jmol-users mailing list >>>> Jmol-users@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>> >>>> >>> >>> >>> -- >>> Robert M. Hanson >>> Larson-Anderson Professor of Chemistry >>> St. Olaf College >>> Northfield, MN >>> http://www.stolaf.edu/people/hansonr >>> >>> >>> If nature does not answer first what we want, >>> it is better to take what answer we get. >>> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>> >>> >>> ------------------------------------------------------------ >>> ------------------ >>> >>> _______________________________________________ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >
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