I'm trying to update the way BioJava interacts with Jmol. We're currently loading structures into Jmol by converting them to PDB format and passing that string to JmolViewer.openStringInline(). Now that Jmol 14.6 is available in maven, we need to move away from PDB.
My first choice would be to use MMTF as the exchange format. Is there a way to pass MMTF to Jmol? Resolver.determineAtomSetCollectionReader failed (probably correctly) to recognize an MMTF binary stream when converted to a string using the default encoding, so openStringInline() doesn't work. Possibly related, the mmtf demo at http://chemapps.stolaf.edu/jmol/jsmol/mmtf.htm gives an unrecognized file format error for me. -Spencer
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