Dear Bob,
Well, Jmol does exactly that! When I load a manually created zipfile with 3
files into Jmol 14.6.4_2016.10.02, it loads the 3 molecules in 3 frames.
Additionally, the documentation suggests it will do so, since options are there
to exclude some files or to ignore the manifest:
https://chemapps.stolaf.edu/jmol/docs/#loadzip/jarfilesandjmolmanifest
Sample file at http://biomodel.uah.es/angel/Jmol/molecs.zip
You can try
load http://biomodel.uah.es/angel/Jmol/molecs.zip
from the console
I'm pretty sure Jmol never went through a ZIP file and looked for files to
read. It would have
to test each one, and I don't recall that being an option.
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