Hi,
I'm revisiting a task that I posted in 2010 as it looks like jmol surfaces
have improved since then:
https://sourceforge.net/p/jmol/mailman/jmol-users/?viewmonth=201012&viewday=20
The idea was to color each residue on the surface with a user specified
color. The commands that we used in 2010 are pasted below. However, the
last command no longer works and produces an 'invalid parameter order'
error (jmol 14.8.0 on mac osx).
I'd appreciate any suggestions/ fixes.
Thanks,
Daniel
load 3AB6.pdb
set usercolorscheme ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,127.5,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,127.5,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,127.5,0.0} ass255.0,127.5,0.0} ass255.0,127.5,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,127.5,0.0}
ass255.0,127.5,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,127.5,0.0}
ass255.0,127.5,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass0.0,255.0,255.0}
ass0.0,255.0,255.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,127.5,0.0}
ass0.0,255.0,255.0} ass0.0,255.0,255.0} ass0.0,255.0,255.0}
ass0.0,255.0,255.0} ass255.0,255.0,0.0} ass255.0,127.5,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass0.0,255.0,255.0} ass0.0,255.0,255.0} ass0.0,255.0,255.0}
ass255.0,255.0,0.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass0.0,255.0,255.0} ass0.0,255.0,255.0} ass0.0,255.0,255.0}
ass0.0,255.0,255.0} ass255.0,127.5,0.0} ass255.0,255.0,0.0}
ass255.0,127.5,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass0.0,255.0,255.0} ass0.0,255.0,255.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,127.5,0.0}
ass255.0,127.5,0.0} ass255.0,255.0,0.0} ass255.0,127.5,0.0}
ass255.0,255.0,0.0} ass255.0,255.0,0.0} ass255.0,255.0,0.0}
ass255.0,127.5,0.0} ass255.0,127.5,0.0} ass0.0,255.0,255.0}
ass255.0,127.5,0.0} ass255.0,127.5,0.0} ass0.0,255.0,255.0}
isosurface select(*:A) ignore { ( hoh ) } molecular color 'user' map
property resno; color isosurface range 1 122
script ERROR: invalid parameter order
------------------------------------------------------------------------------
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