I finally figured out how to document a jQuery UI plugin with jsdoc-toolkit
Here is my code: http://git.sugarlabs.org/projects/karma/repos/mainline/blobs/master/js/ui.scoreboard.js and here is the generated documentation http://karma.sugarlabs.org/docs/index.html of additional interest, I use a Jake task, Rake in JavaScript to generate the docs Here is my Jakefile http://git.sugarlabs.org/projects/karma/repos/mainline/blobs/master/Jakefile--
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