Hi,
I'm wondering if I have mixed versions installed, e.g. the initial MCMC
example below shows a couple of warnings and an error on DataArray.
Any hints?
Thanks,
Rob
Mac OSX 10.9.2, Xcode 5.1Beta3 + command line tools
robs-15inch-2:~ rob$ exec
'/Applications/Julia-0.2.0.app/Contents/Resources/julia/bin/julia'
_
_ _ _(_)_ | A fresh approach to technical computing
(_) | (_) (_) | Documentation: http://docs.julialang.org
_ _ _| |_ __ _ | Type "help()" to list help topics
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 0.2.0 (2013-11-16 23:44 UTC)
_/ |\__'_|_|_|\__'_| | Official http://julialang.org release
|__/ | x86_64-apple-darwin12.5.0
julia> using MCMC
Loading MCMCLikModel model
Loading RWM(scale, tuner) sampler
Loading RAM(scale, rate) sampler
Loading MALA(driftStep, tuner) sampler
Loading HMC(nLeaps, leapStep, tuner) sampler
Loading HMCDA(rate, len, shrinkage, t0, step) sampler
Loading NUTS(maxdoublings, tuner) sampler
Loading SMMALA(driftStep, tuner) sampler
Loading PMALA(driftStep, tuner) sampler
Loading RMHMC(nLeaps, leapStep, nNewton, tuner) sampler
Loading ERMLMC(nLeaps, leapStep, tuner) sampler
Loading SerialMC(steps, burnin, thinning) runner
Loading SerialTempMC(steps, burnin, swapPeriod) runner
Loading SeqMC(steps, burnin, trigger) runner
julia> using DataArrays
julia> mymodel2 = model(v->-dot(v,v),grad=v->-v,init=ones(3))
WARNING: assert(x,y) is deprecated, use @assert x y instead.
in depwarn at deprecated.jl:29
in assert at deprecated.jl:19
in MCMCLikelihoodModel at
/Users/rob/.julia/MCMC/src/modellers/likmodel.jl:43
in MCMCLikelihoodModel at
/Users/rob/.julia/MCMC/src/modellers/likmodel.jl:129
in model at /Users/rob/.julia/MCMC/src/modellers/mcmcmodels.jl:39
WARNING: assert(x,y) is deprecated, use @assert x y instead.
in depwarn at deprecated.jl:29
in assert at deprecated.jl:19
in MCMCLikelihoodModel at
/Users/rob/.julia/MCMC/src/modellers/likmodel.jl:44
in MCMCLikelihoodModel at
/Users/rob/.julia/MCMC/src/modellers/likmodel.jl:129
in model at /Users/rob/.julia/MCMC/src/modellers/mcmcmodels.jl:39
MCMCLikelihoodModel((anonymous function),(anonymous
function),nothing,nothing,(anonymous
function),nothing,nothing,[:pars=>PDims(1,(3,))],3,[1.0,1.0,1.0],[1.0,1.0,1.0])
julia> mychain=run(mymodel2,RWM(0.1), SerialMC(steps=1000,burnin=100))
WARNING: assert(x,y) is deprecated, use @assert x y instead.
in depwarn at deprecated.jl:29
in assert at deprecated.jl:19
in RWM at /Users/rob/.julia/MCMC/src/samplers/RWM.jl:29
in RWM at /Users/rob/.julia/MCMC/src/samplers/RWM.jl:34
ERROR: DataArray not defined
in run_serialmc at /Users/rob/.julia/MCMC/src/runners/SerialMC.jl:61
in run at /Users/rob/.julia/MCMC/src/runners/runners.jl:9
in run at /Users/rob/.julia/MCMC/src/runners/runners.jl:45
julia>
