Ah, very nice, that looks really useful. As far as running the notebook, 
the ipython wiki has some useful scripts, including one for running a 
notebook from the command line:
https://github.com/ipython/ipython/wiki/Cookbook%3a-Notebook-utilities

I also noticed that they have an issue open for converting from various 
formats to .ipynb
https://github.com/ipython/ipython/issues/4930



On Wednesday, 5 February 2014 12:49:14 UTC, j verzani wrote:
>
> I doesn't run the flagged code blocks but this (
> https://github.com/jverzani/WeavePynb.jl/blob/master/src/WeavePynb.jl) 
> steals parts of Judo's (nee Gadfly's) weave function to create ipynb files 
> from markdown. Running of code blocks could be done, but it seems easiest 
> for my use to just tell the students to run all the cells at the outset.
>
> On Wednesday, February 5, 2014 5:57:21 AM UTC-5, Simon Byrne wrote:
>>
>> It would be great to recreate knitr-style functionality purely with 
>> ipython: i.e. feed in a markdown file, and the result is converted to a 
>> notebook with the flagged code blocks automatically run.
>>
>> On Tuesday, 4 February 2014 22:44:14 UTC, Douglas Bates wrote:
>>>
>>> On Tuesday, February 4, 2014 3:21:12 PM UTC-6, Tobias Knopp wrote:
>>>>
>>>> I have also kind of reinvented the wheel for my Gtk based terminal but 
>>>> this was "on purpose" to get something quickly working and later replace 
>>>> it 
>>>> with the "proper" solution.
>>>>
>>>> But its still not entirely clear what the best solution is. The REPL.jl 
>>>> package also seems to have some kind of client server architecture.
>>>>
>>>
>>> I tried to use the unexported start_repl_server function in the REPL 
>>> package but didn't get too far.  It does return a TcpServer object but 
>>> connecting a socket to that port causes a peculiar error in run_repl.  I 
>>> realize that this package is under development, of course.
>>>
>>>
>>>> What I currently do is to add a second process with "addprocs". Then I 
>>>> parse string commands that I get from a GtkEntry in the GUI process and 
>>>> eval them using @fetchfrom 2 ... But I am not sure if this is the best way.
>>>>
>>>>
>>>> Am Dienstag, 4. Februar 2014 22:08:15 UTC+1 schrieb Jake Bolewski:
>>>>>
>>>>> Maybe you should take a look, its written entirely in Julia :-)  You 
>>>>> will have to follow the message spec, but that is well 
>>>>> documented<http://ipython.org/ipython-doc/dev/development/messaging.html>.
>>>>>  
>>>>>  
>>>>>
>>>>>
>>>>> On Tuesday, February 4, 2014 3:41:14 PM UTC-5, Douglas Bates wrote:
>>>>>>
>>>>>> On Tuesday, February 4, 2014 2:08:55 PM UTC-6, Jake Bolewski wrote:
>>>>>>>
>>>>>>> IJulia?
>>>>>>>
>>>>>>
>>>>>> I realize that I am reinventing a certain amount of IJulia.  However, 
>>>>>> my python is weak and i didn't have the courage to start reading through 
>>>>>> the IJulia code.
>>>>>>
>>>>>

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