Can you do a `Pkg.update()`? I may have just fixed this. -E On Fri, Dec 19, 2014 at 4:55 PM, Tomas Mikoviny <[email protected]> wrote:
> sorry this is the repost I've screwed up formatting in previous post... > > Hi there, > > I've just got my new Mac and installed the official binary 0.3.3 version > (from dmg) and in parallel I have the 0.4 version compiled. > Running 0.3 version with clear table (no ~/,julia* initially) and > installing Homebrew first and HDF5 second I get weird error I've never seen > before: > > Will not force Homebrew to rebuild dependency "libhdf5". > > Am I doing something wrong? I've just spent couple of hours on this today > and cannot really see where the problem might be. > > Tomas > > > for complete picture here is full output: > _ > _ _ _(_)_ | A fresh approach to technical computing > (_) | (_) (_) | Documentation: http://docs.julialang.org > _ _ _| |_ __ _ | Type "help()" for help. > | | | | | | |/ _` | | > | | |_| | | | (_| | | Version 0.3.3 (2014-11-23 20:19 UTC) > _/ |\__'_|_|_|\__'_| | 'Official http://julialang.org/ release' > |__/ | x86_64-apple-darwin13.3.0 > > julia> Pkg.init() > INFO: Initializing package repository /Users/tomik/.julia/v0.3 > INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl > > julia> Pkg.add("HDF5") > INFO: Cloning cache of BinDeps from git:// > github.com/JuliaLang/BinDeps.jl.git > INFO: Cloning cache of Blosc from git://github.com/stevengj/Blosc.jl.git > INFO: Cloning cache of Compat from git:// > github.com/JuliaLang/Compat.jl.git > INFO: Cloning cache of HDF5 from git://github.com/timholy/HDF5.jl.git > INFO: Cloning cache of Homebrew from git:// > github.com/JuliaLang/Homebrew.jl.git > INFO: Cloning cache of JSON from git://github.com/JuliaLang/JSON.jl.git > INFO: Cloning cache of SHA from git://github.com/staticfloat/SHA.jl.git > INFO: Cloning cache of URIParser from git:// > github.com/JuliaWeb/URIParser.jl.git > INFO: Installing BinDeps v0.3.7 > INFO: Installing Blosc v0.1.0 > INFO: Installing Compat v0.2.6 > INFO: Installing HDF5 v0.4.7 > INFO: Installing Homebrew v0.1.12 > INFO: Installing JSON v0.3.9 > INFO: Installing SHA v0.0.3 > INFO: Installing URIParser v0.0.3 > INFO: Building Blosc > % Total % Received % Xferd Average Speed Time Time Time > Current > Dload Upload Total Spent Left > Speed > 100 28648 100 28648 0 0 41977 0 --:--:-- --:--:-- --:--:-- > 41944 > INFO: Building Homebrew > INFO: Cloning brew from https://github.com/Homebrew/homebrew.git > Cloning into '/Users/tomik/.julia/v0.3/Homebrew/deps/usr'... > remote: Counting objects: 3472, done. > remote: Compressing objects: 100% (3328/3328), done. > remote: Total 3472 (delta 48), reused 934 (delta 23) > Receiving objects: 100% (3472/3472), 2.46 MiB | 417 KiB/s, done. > Resolving deltas: 100% (48/48), done. > % Total % Received % Xferd Average Speed Time Time Time > Current > Dload Upload Total Spent Left > Speed > 100 258k 100 258k 0 0 102k 0 0:00:02 0:00:02 --:--:-- > 102k > Cloning into > '/Users/tomik/.julia/v0.3/Homebrew/deps/usr/Library/Taps/staticfloat/homebrew-juliadeps'... > Tapped 28 formulae > HEAD is now at 3d428af fakeroot: add 1.20.2 bottle. > HEAD is now at 1431f1c Merge pull request #26 from staticfloat/staging > INFO: Building HDF5 > ===============================================================[ ERROR: > HDF5 ]================================================================ > > Will not force Homebrew to rebuild dependency "libhdf5". > Please make any necessary adjustments manually (This might just be a > version upgrade) > while loading /Users/tomik/.julia/v0.3/HDF5/deps/build.jl, in expression > starting on line 23 > > > ============================================================================================================================================== > > ===============================================================[ BUILD > ERRORS ]=============================================================== > > WARNING: HDF5 had build errors. > > - packages with build errors remain installed in /Users/tomik/.julia/v0.3 > - build a package and all its dependencies with `Pkg.build(pkg)` > - build a single package by running its `deps/build.jl` script > > > ============================================================================================================================================== > INFO: Package database updated > >
