I have the IJulia kernel restarting issue that, based on my search, was
supposed to have been resolved. After I start IJulia notebook, kernel keeps
restarting every few seconds. I am running Julia on Linux Mint 17.1. The
issue seems to be linked to ZMQ.
Error from running IJulia notebook:
2014-12-27 18:53:27.031 [NotebookApp] KernelRestarter: restarting kernel
> (1/5)
> WARNING:root:kernel 5a345da2-dbf7-4388-b69e-1074add0e8bb restarted
> ERROR: could not open file /home/alex/.julia/v0.3/ZMQ/src/../deps/deps.jl
> in include at ./boot.jl:245
> in include_from_node1 at ./loading.jl:128
> in include at ./boot.jl:245
> in include_from_node1 at ./loading.jl:128
> in reload_path at loading.jl:152
> in _require at loading.jl:67
> in require at loading.jl:51
> in include at ./boot.jl:245
> in include_from_node1 at ./loading.jl:128
> in include at ./boot.jl:245
> in include_from_node1 at loading.jl:128
> in process_options at ./client.jl:285
> in _start at ./client.jl:354
> while loading /home/alex/.julia/v0.3/ZMQ/src/ZMQ.jl, in expression
> starting on line 6
> while loading /home/alex/.julia/v0.3/IJulia/src/IJulia.jl, in expression
> starting on line 13
> while loading /home/alex/.julia/v0.3/IJulia/src/kernel.jl, in expression
> starting on line 4
Pkg.update() results in:
INFO: Updating METADATA...
> INFO: Computing changes...
> INFO: No packages to install, update or remove
Finally:
julia> Pkg.build("ZMQ")
INFO: Building ZMQ
INFO: Attempting to Create directory
/home/alex/.julia/v0.3/ZMQ/deps/downloads
INFO: Directory /home/alex/.julia/v0.3/ZMQ/deps/downloads already created
INFO: Downloading file http://download.zeromq.org/zeromq-3.2.4.tar.gz
INFO: Done downloading file http://download.zeromq.org/zeromq-3.2.4.tar.gz
INFO: Attempting to Create directory /home/alex/.julia/v0.3/ZMQ/deps/src
INFO: Directory /home/alex/.julia/v0.3/ZMQ/deps/src already created
INFO: Attempting to Create directory /home/alex/.julia/v0.3/ZMQ/deps
INFO: Directory /home/alex/.julia/v0.3/ZMQ/deps already created
INFO: Attempting to Create directory
/home/alex/.julia/v0.3/ZMQ/deps/src/zeromq-3.2.4
INFO: Directory /home/alex/.julia/v0.3/ZMQ/deps/src/zeromq-3.2.4 already
created
INFO: Attempting to Create directory
/home/alex/.julia/v0.3/ZMQ/deps/builds/zmq
INFO: Directory /home/alex/.julia/v0.3/ZMQ/deps/builds/zmq already created
INFO: Changing Directory to /home/alex/.julia/v0.3/ZMQ/deps/builds/zmq
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for gcc option to accept ISO C99... -std=gnu99
checking for g++... no
checking for c++... no
checking for gpp... no
checking for aCC... no
checking for CC... no
checking for cxx... no
checking for cc++... no
checking for cl.exe... no
checking for FCC... no
checking for KCC... no
checking for RCC... no
checking for xlC_r... no
checking for xlC... no
checking whether we are using the GNU C++ compiler... no
checking whether g++ accepts -g... no
checking dependency style of g++... none
checking whether gcc -std=gnu99 and cc understand -c and -o together... yes
checking for a sed that does not truncate output... /bin/sed
checking for gawk... (cached) gawk
checking for xmlto... no
checking for asciidoc... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to
x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain
format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99
object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64)
supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether the C compiler works... yes
checking whether we are using Intel C compiler... no
checking whether we are using Sun Studio C compiler... no
checking whether we are using clang C compiler... no
checking whether we are using gcc >= 4 C compiler... yes
checking whether the C++ compiler works... no
configure: error: Unable to find a working C++ compiler
=================================[ ERROR: ZMQ
]=================================
failed process:
Process(setenv(`/home/alex/.julia/v0.3/ZMQ/deps/src/zeromq-3.2.4/configure
--prefix=/home/alex/.julia/v0.3/ZMQ/deps/usr`,Union(ASCIIString,UTF8String)["PATH=/home/alex/.julia/v0.3/ZMQ/deps/usr/bin:/home/alex/anaconda3/bin:/home/alex/anaconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games","TEXTDOMAIN=im-config","DEFAULTS_PATH=/usr/share/gconf/default.default.path","XDG_SESSION_COOKIE=519dfb9ead5a6c723d0da149547ab069-1419614390.811845-1475910293","DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-FBZvEQfOAl,guid=46ccd9cf2123f1d8b25a2a20549d98b9","MDM_XSERVER_LOCATION=local","XDG_SESSION_DESKTOP=default","SSH_AGENT_PID=2083","USER=alex","XDG_CONFIG_DIRS=/etc/xdg/xdg-default:/etc/xdg","USERNAME=alex","GDMSESSION=default","MDMSESSION=default","XDG_DATA_DIRS=/usr/share/default:/usr/share/gnome:/usr/local/share/:/usr/share/:/usr/share/mdm/","SHELL=/bin/bash","XDG_SEAT=seat0","XAUTHORITY=/home/alex/.Xauthority","SESSION_MANAGER=local/aflyax-laptop:@/tmp/.ICE-unix/1931,unix/aflyax-laptop:/tmp/.ICE-unix/1931","TERM=xterm","HOME=/home/alex","COLORTERM=gnome-terminal","VTE_VERSION=3409","XDG_CURRENT_DESKTOP=X-Cinnamon","LANG=en_US.UTF-8","SHLVL=1","GNOME_DESKTOP_SESSION_ID=this-is-deprecated","LOGNAME=alex","XDG_RUNTIME_DIR=/run/user/1000","SSH_AUTH_SOCK=/run/user/1000/keyring-1WW76z/ssh","DESKTOP_SESSION=default","_=/usr/bin/julia","GPG_AGENT_INFO=/run/user/1000/keyring-1WW76z/gpg:0:1","PWD=/home/alex","DISPLAY=:0","GDM_XSERVER_LOCATION=local","CPPFLAGS=
-I/home/alex/.julia/v0.3/ZMQ/deps/usr/include","LDFLAGS=
-L/home/alex/.julia/v0.3/ZMQ/deps/usr/lib -Wl,-rpath
-Wl,/home/alex/.julia/v0.3/ZMQ/deps/usr/lib","XDG_VTNR=7","WINDOWID=39862611","MANDATORY_PATH=/usr/share/gconf/default.mandatory.path","XDG_SESSION_ID=c1","MDM_LANG=en_US.UTF-8","TEXTDOMAINDIR=/usr/share/locale/","PKG_CONFIG_PATH=/home/alex/.julia/v0.3/ZMQ/deps/usr/lib/pkgconfig","WINDOWPATH=7","LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:","GNOME_KEYRING_CONTROL=/run/user/1000/keyring-1WW76z"]),
ProcessExited(1)) [1]
while loading /home/alex/.julia/v0.3/ZMQ/deps/build.jl, in expression
starting on line 21
================================================================================
================================[ BUILD ERRORS
]================================
WARNING: ZMQ had build errors.
- packages with build errors remain installed in /home/alex/.julia/v0.3
- build the package(s) and all dependencies with `Pkg.build("ZMQ")`
- build a single package by running its `deps/build.jl` script
================================================================================
Thanks!..
