I was able to successfully build julia from source and run the repl from a (login) node on the machine. The build procedure was almost identical to previous attempts (following the instructions provided to use the intel compilers and MKL, without using any local versions of dependencies), but from a different machine and operating system (Ubuntu 14.04.1 LTS instead of OS X 10.9.5). The only noticeable difference is that the intel compilers will fail if locale information is not available, which it's not by default when logging in from OS X (see https://software.intel.com/en-us/articles/cdiag912), but perhaps there are others.
The only minor problem was that running make -j 12 produced an error about libopenlibm.so.1 not existing. Re-running make -j 12 led to a successful build so my assumption is that there is an unspecified dependency involving this library. On Tuesday, February 3, 2015 at 9:59:12 PM UTC+1, Patrick Sanan wrote: > > Someone at the computer center did manage to build successfully julia > today using intel compilers and MKL, using a procedure very similar to > mine, so I am hopeful that we will be able to isolate any differences > tomorrow. > > On 03/02/15 09:49 PM, Tony Kelman wrote: > > I can't find any evidence of an issue ever being reported on this, no > mention of uv_tick__stop_semaphore on Julia's issue tracker. > > I'd have to dig into libuv's source code and see where these symbols > normally come from, and determine what is unusual about these Cray systems. > > > On Tuesday, February 3, 2015 at 4:18:46 AM UTC-8, Patrick Sanan wrote: >> >> I am having a nearly-identical issue with the release-0.3 branch (the >> same errors with uv_tick__... symbols) on a Cray XC-40 system. Has any >> solution or workaround been discovered since this was posted? >> >> On Friday, October 17, 2014 at 5:05:52 PM UTC+2, Niklas Vanhainen wrote: >>> >>> Hi >>> >>> I'm having problems getting Julia to build on a cluster that I'm using. >>> It's a Cray XC-30 cluster with an Ivy-Bridge architecture, and it appears >>> to be running on SLES 11 >>> >>> Right now, I'm building this without linking to external BLAS, FFTW, >>> etc. libraries (the heavy lifting matrix operations will be done in a C >>> function anyways, and I had major problems getting anywhere while linking >>> to cray-libsci) >>> The problem I'm having right now is that "flisp" will not link, because >>> of problems with the symbols "uv_tick__stop_semaphore" and >>> "uv_tick__start_semaphore" in libuv. I've tried using both the provided >>> libuv as well as downloading it separately and compiling. I get related but >>> different problems in both cases. >>> >>> First, in the case with the provided libuv: >>> >>> >>> Making install in SYM >>> CC src/jltypes.o >>> CC src/gf.o >>> CC src/support/hashing.o >>> CC src/support/timefuncs.o >>> CC src/support/ptrhash.o >>> CC src/support/operators.o >>> CC src/support/utf8.o >>> CC src/support/ios.o >>> CC src/support/htable.o >>> CC src/support/bitvector.o >>> CC src/support/int2str.o >>> CC src/support/libsupportinit.o >>> CC src/support/arraylist.o >>> CC src/support/strtod.o >>> LINK src/support/libsupport.a >>> CC src/flisp/flisp.o >>> CC src/flisp/builtins.o >>> CC src/flisp/string.o >>> CC src/flisp/equalhash.o >>> CC src/flisp/table.o >>> CC src/flisp/iostream.o >>> CC src/flisp/julia_extensions.o >>> LINK src/flisp/libflisp.a >>> CC src/flisp/flmain.o >>> LINK src/flisp/flisp >>> /cfs/milner/scratch/n/niklasva/julia_build/julia/usr/lib/libuv.a(libuv_la-core.o):(.note.stapsdt+0x24): >>> >>> undefined reference to `uv_tick__start_semaphore' >>> /cfs/milner/scratch/n/niklasva/julia_build/julia/usr/lib/libuv.a(libuv_la-core.o):(.note.stapsdt+0x70): >>> >>> undefined reference to `uv_tick__stop_semaphore' >>> /cfs/milner/scratch/n/niklasva/julia_build/julia/usr/lib/libuv.a(libuv_la-core.o):(.note.stapsdt+0xbc): >>> >>> undefined reference to `uv_tick__stop_semaphore' >>> collect2: error: ld returned 1 exit status >>> make[3]: *** [flisp] Error 1 >>> make[2]: *** [flisp/libflisp.a] Error 2 >>> make[1]: *** [julia-release] Error 2 >>> make: *** [release] Error 2 >>> >>> >>> >>> >>> Second, in the case of the external libuv: >>> Making install in SYM >>> CC src/jltypes.o >>> CC src/gf.o >>> CC src/support/hashing.o >>> CC src/support/timefuncs.o >>> CC src/support/ptrhash.o >>> CC src/support/operators.o >>> CC src/support/utf8.o >>> CC src/support/ios.o >>> CC src/support/htable.o >>> CC src/support/bitvector.o >>> CC src/support/int2str.o >>> CC src/support/libsupportinit.o >>> CC src/support/arraylist.o >>> CC src/support/strtod.o >>> LINK src/support/libsupport.a >>> CC src/flisp/flisp.o >>> CC src/flisp/builtins.o >>> CC src/flisp/string.o >>> CC src/flisp/equalhash.o >>> CC src/flisp/table.o >>> CC src/flisp/iostream.o >>> CC src/flisp/julia_extensions.o >>> LINK src/flisp/libflisp.a >>> CC src/flisp/flmain.o >>> LINK src/flisp/flisp >>> /usr/bin/ld: flisp: hidden symbol `uv_tick__stop_semaphore' in >>> /cfs/scratch/n/niklasva/libuv/lib/libuv.a(uv-dtrace.o) is referenced by DSO >>> /usr/bin/ld: final link failed: Bad value >>> collect2: error: ld returned 1 exit status >>> make[3]: *** [flisp] Error 1 >>> make[2]: *** [flisp/libflisp.a] Error 2 >>> make[1]: *** [julia-release] Error 2 >>> make: *** [release] Error 2 >>> >>> In the second case, this is the contents of my Make.user: >>> override LIBUV = /cfs/scratch/n/niklasva/libuv/lib/libuv.a >>> override LIBUV_INC = /cfs/scratch/n/niklasva/libuv/include/ >>> >>> >>> I would be very grateful if someone could help me fix this problem. >>> >> >
