Please open this as an issue on github On Wed, Aug 26, 2015 at 10:41 AM Yonghee Lee <drago...@gmail.com> wrote:
> Hi! I got an error during sparse Cholesky computation related Mixed > Models. So I ran test for MixedModels and I got the same error as below: > > /usr/bin/julia: symbol lookup error: > /usr/bin/../lib/x86_64-linux-gnu/julia/libcholmod.so: undefined symbol: > dpotrf_ > > I found very similar issue for JuliaBox: > > https://github.com/JuliaLang/JuliaBox/issues/221 > > I tried same codes in the issue and got the same error: > > julia> B1 = sprandn(100,100,0.1); > julia> B2 = speye(100); > julia> x = kron(B2,B1)\randn(100*100); > julia: symbol lookup error: > /usr/bin/../lib/x86_64-linux-gnu/julia/libcholmod.so: > undefined symbol: dpotrf_ > > There has been no problem, but it comes up suddenly. > I installed Julia from the official PPA and also already tried to remove > Julia completely, but the problem persisted. > > If anyone can help solving this problem, I will appreciate!! > Yonghee Lee > > -------------------------------------------- error message and system info > ----------------------------------------- > > > julia> Base.Pkg.test("MixedModels") > INFO: Testing MixedModels > PASSED: plsonescalar.jl > PASSED: plsonevector.jl > PASSED: plstwoscalar.jl > PASSED: plstwovector.jl > PASSED: plsdiagnested.jl > /usr/bin/julia: symbol lookup error: > /usr/bin/../lib/x86_64-linux-gnu/julia/libcholmod.so: undefined symbol: > dpotrf_ > ======================================[ ERROR: MixedModels > ]====================================== > > failed process: Process(`/usr/bin/julia > /home/ylee19067/.julia/v0.3/MixedModels/test/runtests.jl`, > ProcessExited(127)) [127] > > > ================================================================================================== > INFO: No packages to install, update or remove > ERROR: MixedModels had test errors > in error at error.jl:21 > in test at pkg/entry.jl:718 > in anonymous at pkg/dir.jl:28 > in cd at ./file.jl:20 > in cd at pkg/dir.jl:28 > in test at pkg.jl:67 > > julia> versioninfo(true) > Julia Version 0.3.11 > Commit 483dbf5 (2015-07-27 06:18 UTC) > Platform Info: > System: Linux (x86_64-linux-gnu) > CPU: Intel(R) Core(TM) i7-4770 CPU @ 3.40GHz > WORD_SIZE: 64 > Ubuntu 14.04.3 LTS > uname: Linux 3.13.0-62-generic #102-Ubuntu SMP Tue Aug 11 14:29:36 UTC > 2015 x86_64 x86_64 > Memory: 31.36642074584961 GB (27138.046875 MB free) > > BLAS: libopenblas (NO_LAPACK NO_LAPACKE DYNAMIC_ARCH NO_AFFINITY Haswell) > LAPACK: liblapack.so.3 > LIBM: libopenlibm > LLVM: libLLVM-3.3 > Environment: > TERM = xterm > XDG_SESSION_PATH = /org/freedesktop/DisplayManager/Session2 > XDG_SEAT_PATH = /org/freedesktop/DisplayManager/Seat0 > DEFAULTS_PATH = /usr/share/gconf/ubuntu.default.path > PATH = > /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games > MANDATORY_PATH = /usr/share/gconf/ubuntu.mandatory.path > NODE_PATH = /usr/lib/nodejs:/usr/lib/node_modules:/usr/share/javascript > > COMPIZ_BIN_PATH = /usr/bin/ > > > $ wajig show julia > Package: julia > State: installed > Automatically installed: no > Version: 0.3.11-trusty1 > Priority: extra > Section: science > Maintainer: Debian Julia Team <pkg-julia-de...@lists.alioth.debian.org> > Architecture: amd64 > Uncompressed Size: 67.1 M > Depends: libc6 (>= 2.17), libdouble-conversion1, libgcc1 (>= 1:4.1.1), > libgfortran3 (>= 4.6), > liblapack3 | liblapack.so.3, libopenblas-base, libstdc++6 (>= > 4.6), zlib1g (>= 1:1.2.0), > liblapack3 | libatlas3-base, libpcre3 (>= 8.31), libfftw3-3, > libcholmod1.7.1 | > libcholmod2.1.2, libumfpack5.4.0 | libumfpack5.6.2, libgmp10 (>= > 5.1.3), libarpack2, > librmath-julia-dev, libmpfr4, git > PreDepends: multiarch-support > Suggests: ess (>= 12.09-1~), julia-doc > Conflicts: julia >
