Can someone help me figure out how to get julia 0.4 working on my SGE
computing cluster? I tried ClusterMangers, but it throws a lot of errors
(that I list below). For what it is worth, I had it working a long time ago
in julia 0.3 on this cluster, but I have deleted that installation and
really want to utilize the benefits of 0.4.
_ _ _(_)_ | A fresh approach to technical computing
(_) | (_) (_) | Documentation: http://docs.julialang.org
_ _ _| |_ __ _ | Type "?help" for help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 0.4.0 (2015-10-08 06:20 UTC)
_/ |\__'_|_|_|\__'_| | Official http://julialang.org/ release
|__/ | x86_64-unknown-linux-gnu
julia> using ClusterManagers
WARNING: Base.String is deprecated, use AbstractString instead.
likely near
/home/student/wjenkin6/.julia/v0.4/ClusterManagers/src/qsub.jl:3
WARNING: Base.String is deprecated, use AbstractString instead.
likely near
/home/student/wjenkin6/.julia/v0.4/ClusterManagers/src/qsub.jl:3
WARNING: Base.String is deprecated, use AbstractString instead.
likely near
/home/student/wjenkin6/.julia/v0.4/ClusterManagers/src/qsub.jl:8
WARNING: Base.String is deprecated, use AbstractString instead.
likely near
/home/student/wjenkin6/.julia/v0.4/ClusterManagers/src/qsub.jl:8
WARNING: Union(args...) is deprecated, use Union{args...} instead.
in depwarn at deprecated.jl:73
in call at deprecated.jl:50
in include at ./boot.jl:261
in include_from_node1 at ./loading.jl:304
in include at ./boot.jl:261
in include_from_node1 at ./loading.jl:304
in require at ./loading.jl:243
while loading
/home/student/wjenkin6/.julia/v0.4/ClusterManagers/src/qsub.jl, in
expression starting on line 14
WARNING: Union(args...) is deprecated, use Union{args...} instead.
in depwarn at deprecated.jl:73
in call at deprecated.jl:50
in include at ./boot.jl:261
in include_from_node1 at ./loading.jl:304
in include at ./boot.jl:261
in include_from_node1 at ./loading.jl:304
in require at ./loading.jl:243
while loading
/home/student/wjenkin6/.julia/v0.4/ClusterManagers/src/qsub.jl, in
expression starting on line 70
julia> ClusterManagers.addprocs_sge(5)
WARNING: Base.String is deprecated, use AbstractString instead.
likely near no file:0
WARNING: Base.String is deprecated, use AbstractString instead.
likely near no file:0
WARNING: Base.String is deprecated, use AbstractString instead.
likely near no file:0
WARNING: src::AbstractCmd |> dest::AbstractCmd is deprecated, use
pipeline(src,dest) instead.
in depwarn at deprecated.jl:73
in |> at deprecated.jl:50
in launch at
/home/student/wjenkin6/.julia/v0.4/ClusterManagers/src/qsub.jl:30
in anonymous at task.jl:63
while loading no file, in expression starting on line 0
Unable to read script file because of error: error opening : No such file
or directory
batch queue not available (could not run qsub)
0-element Array{Int64,1}
Here is my package status list:
julia> Pkg.status()
7 required packages:
- Bio 0.1.0
- ClusterManagers 0.0.5
- FastaIO 0.1.4
- Gadfly 0.3.18
- HDF5 0.5.6
- JLD 0.5.6
- NLopt 0.2.3
45 additional packages:
- ArrayViews 0.6.4
- BinDeps 0.3.19
- Blosc 0.1.4
- BufferedStreams 0.0.2
- Calculus 0.1.14
- Codecs 0.1.5
- ColorTypes 0.2.0
- Colors 0.6.0
- Compat 0.7.7
- Compose 0.3.18
- Contour 0.0.8
- DataArrays 0.2.19
- DataFrames 0.6.10
- DataStructures 0.3.13
- Dates 0.4.4
- Distances 0.2.1
- Distributions 0.8.7
- Docile 0.5.19
- DualNumbers 0.1.5
- FileIO 0.0.3
- FixedPointNumbers 0.1.0
- GZip 0.2.18
- Grid 0.4.0
- Hexagons 0.0.4
- ImmutableArrays 0.0.11
- IntervalTrees 0.0.4
- Iterators 0.1.9
- JSON 0.5.0
- KernelDensity 0.1.2
- Libz 0.0.2
- Loess 0.0.5
- MathProgBase 0.3.19
- NaNMath 0.1.1
- Optim 0.4.4
- PDMats 0.3.6
- Reexport 0.0.3
- SHA 0.1.2
- Showoff 0.0.6
- SortingAlgorithms 0.0.6
- StatsBase 0.7.4
- StatsFuns 0.2.0
- Switch 0.0.1
- URIParser 0.1.1
- WoodburyMatrices 0.1.2
- tmpfDVFlA 0.0.0- non-repo (unregistered)
